Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 174 3e-38
seq1223 118 2e-21
>seq2502
Length=4400873
Score = 174 bits (192), Expect = 3e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || |||| || | ||||||||| || || ||||| || || || ||||
Sbjct 928808 TACCACCCCGCAGGCGCAAGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 928749
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || || ||||| ||||||||||| || || || || || ||||
Sbjct 928748 ACAGGGTACGGCCATCCTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 928689
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||||||||| || ||||| ||||| ||||||||||| || ||| | || || |
Sbjct 928688 GGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGA 928629
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| ||| || |||||||| |||| ||||| ||||| ||||||||
Sbjct 928628 CTTCCAGAGTGATTGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 928580
Score = 143 bits (158), Expect = 5e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || ||||||||||| ||||||||||| || || || || || || | | ||
Sbjct 928198 CGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA 928139
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||| || || || || || || || ||||| || ||||||||
Sbjct 928138 TCCTCCAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 928079
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| ||||| || || ||||| ||||| || || | || || || || | || ||
Sbjct 928078 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATG 928019
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|||||||| |||| ||||| || || ||||||||| ||
Sbjct 928018 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTTT 927980
>seq1223
Length=7284131
Score = 118 bits (130), Expect = 2e-21
Identities = 124/163 (76%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208
|| ||||||||||||||| | |||||||| || ||||| || ||||| || || |||||
Sbjct 1989900 GCTTTATGGTGGTACTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1989959
Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268
|| || || || ||||| || ||||||| | || || ||||| ||||| || |||||
Sbjct 1989960 CTGAGAAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1990019
Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
|| || | ||| | || ||||| ||| |||| || || ||||
Sbjct 1990020 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1990062
Score = 87.8 bits (96), Expect = 4e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369
||| |||||||||||||| ||||| | || || ||||| |||||||| | ||||| ||
Sbjct 1992276 AGCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTACGG 1992335
Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429
| || || || || |||| ||| | || || | |||||||| || ||| | || ||
Sbjct 1992336 ATTAGCAGCTTGCGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATATTTGACCAT 1992395
Query 60430 AATGCAATTGTTA 60442
| |||||||| ||
Sbjct 1992396 ATTGCAATTGGTA 1992408
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502
|| |||||| | |||| || || || || |||| ||||| || |||||||| || ||
Sbjct 1992906 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 1992965
Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562
||||||| || ||| || || | ||| |||| || || || || ||||||||||||
Sbjct 1992966 AAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGGTAAC 1993025
Query 60563 TTCTATTTTAGAACATACAAG 60583
||||| | | | ||||| |||
Sbjct 1993026 TTCTACTATCGGACATATAAG 1993046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981790303854287
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |