Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq2335 149 7e-31
>seq2335
Length=5215980
Score = 149 bits (164), Expect = 7e-31
Identities = 568/883 (64%), Gaps = 19/883 (2%)
Strand=Plus/Plus
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||| ||||| || || |||| ||| || ||| | | ||||| || | || ||
Sbjct 1499922 ATCAAACTTATTAGCAAACAAGTGGTGGT--TTCGT-AGCATCCAGTTCAAGTCTCCTAC 1499978
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| || || || || || || | ||| || || ||||| || || || | || || |
Sbjct 1499979 TCCAAAAACACAGACAGAACGAATGTGAACTCCACTGCAGGGTGGGTAGGGCGCACCTTT 1500038
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
| ||| || ||||| |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 1500039 GGACACGTCACCCTCAAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATGTCAGA 1500098
Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
||||||||||| |||| || | | || || || || | || | |||||| | |
Sbjct 1500099 AAGGTCGTACTTGT-CACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGAATTG 1500157
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATG-----AACTC 162413
| ||||| |||| || ||||| || || || || || | |||||| ||| || |
Sbjct 1500158 TTGCCCATAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAATTTAAGTA 1500217
Query 162414 CCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGC 162473
| || ||||| | ||| | | | | || || ||| | || | ||| || ||
Sbjct 1500218 TTTTACTGTTTTCTAGTACATATTCT-----ACAAAGTTTCTGCTAACTACAAAATAGGC 1500272
Query 162474 GCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGAC 162533
|| |||||||| || || ||| | || || | | ||||||| || |||||
Sbjct 1500273 ACTGCCAGAAAAAACTGGAGTGCTGAGGGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTT 1500332
Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593
|| | || || | | | | || ||| ||||||| | |||| | || |
Sbjct 1500333 TATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCCTTATTAACAGGCAT 1500392
Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653
| ||| || || | ||||| |||| | ||| || | | || || || |
Sbjct 1500393 TTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCTG 1500452
Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713
|||||||| | |||||||| | || || ||||| || | |||||||| || ||
Sbjct 1500453 GTTGGTCTTTATAGGAAAGTCCATACCACATAGATTTATTAGGTATTTCCAGTTTGAACT 1500512
Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
|| ||| ||||| | | ||||| | || ||||| || | ||||| || || ||
Sbjct 1500513 TCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATA 1500572
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
|| || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| |
Sbjct 1500573 TACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 1500632
Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
|| | ||| | || || | |||| | ||||| || | |||||| | ||||
Sbjct 1500633 TACAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGAATGCAGTAAAAATTC 1500690
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
|| || || ||||| | || || | ||| || | |||||| || || || | |||||
Sbjct 1500691 TGTGGAGCATAGATTGATCTTAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACT 1500750
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|| || || || || || || || || || || ||||||||
Sbjct 1500751 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAG 1500793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578410793236800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |