Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2335 149 7e-31 >seq2335 Length=5215980 Score = 149 bits (164), Expect = 7e-31 Identities = 568/883 (64%), Gaps = 19/883 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| ||||| || || |||| ||| || ||| | | ||||| || | || || Sbjct 1499922 ATCAAACTTATTAGCAAACAAGTGGTGGT--TTCGT-AGCATCCAGTTCAAGTCTCCTAC 1499978 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || | ||| || || ||||| || || || | || || | Sbjct 1499979 TCCAAAAACACAGACAGAACGAATGTGAACTCCACTGCAGGGTGGGTAGGGCGCACCTTT 1500038 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||| || ||||| |||| |||||||| || ||||| | | || | |||||| || Sbjct 1500039 GGACACGTCACCCTCAAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATGTCAGA 1500098 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||||||||| |||| || | | || || || || | || | |||||| | | Sbjct 1500099 AAGGTCGTACTTGT-CACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGAATTG 1500157 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATG-----AACTC 162413 | ||||| |||| || ||||| || || || || || | |||||| ||| || | Sbjct 1500158 TTGCCCATAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAATTTAAGTA 1500217 Query 162414 CCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGC 162473 | || ||||| | ||| | | | | || || ||| | || | ||| || || Sbjct 1500218 TTTTACTGTTTTCTAGTACATATTCT-----ACAAAGTTTCTGCTAACTACAAAATAGGC 1500272 Query 162474 GCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGAC 162533 || |||||||| || || ||| | || || | | ||||||| || ||||| Sbjct 1500273 ACTGCCAGAAAAAACTGGAGTGCTGAGGGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTT 1500332 Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 || | || || | | | | || ||| ||||||| | |||| | || | Sbjct 1500333 TATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCCTTATTAACAGGCAT 1500392 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | ||| || || | ||||| |||| | ||| || | | || || || | Sbjct 1500393 TTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCTG 1500452 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 |||||||| | |||||||| | || || ||||| || | |||||||| || || Sbjct 1500453 GTTGGTCTTTATAGGAAAGTCCATACCACATAGATTTATTAGGTATTTCCAGTTTGAACT 1500512 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 || ||| ||||| | | ||||| | || ||||| || | ||||| || || || Sbjct 1500513 TCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATA 1500572 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| | Sbjct 1500573 TACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 1500632 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || | ||| | || || | |||| | ||||| || | |||||| | |||| Sbjct 1500633 TACAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGAATGCAGTAAAAATTC 1500690 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || || || ||||| | || || | ||| || | |||||| || || || | ||||| Sbjct 1500691 TGTGGAGCATAGATTGATCTTAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACT 1500750 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || |||||||| Sbjct 1500751 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAG 1500793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578410793236800