Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1180 179 5e-39 seq1439 134 2e-25 seq2350 116 5e-20 seq2307 107 3e-17 seq2912 104 3e-16 >seq1180 Length=1499208 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || ||| ||||| Sbjct 1474529 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 1474582 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 1474583 RGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 1474642 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 1474643 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 1474702 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1474703 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1474751 Score = 109 bits (120), Expect = 8e-18 Identities = 115/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 1470758 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1470705 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 1470704 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 1470645 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063 ||||||| || |||||||||| ||| ||| Sbjct 1470644 CTGGCGCACTACAACAAGCGCTCCACCATC 1470615 Score = 109 bits (120), Expect = 8e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 |||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 1485954 CCTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCG 1485895 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1485894 GCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1485845 >seq1439 Length=7134548 Score = 134 bits (148), Expect = 2e-25 Identities = 177/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| || || || || |||| Sbjct 5622533 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCATCCTGACAC-----GGGCATC- 5622480 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||| | Sbjct 5622479 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATTGCT 5622420 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | ||||||||| ||| ||| | || |||||| Sbjct 5622419 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGTTCCACCATCACATCCCGGGAGATC 5622360 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| ||||||||| ||||||||| Sbjct 5622359 CAGACAGCCGTGCGCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGC 5622300 Query 725139 ACCA 725142 |||| Sbjct 5622299 ACCA 5622296 >seq2350 Length=253660 Score = 116 bits (128), Expect = 5e-20 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| ||||| Sbjct 176586 CAGCTCTGGTACGCCATCATCGAGTCCCAGACTGAGACTGGCACCCCCTACATGCTCTAC 176645 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 176646 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 176704 Query 262210 CCTGTGCACCGAGATCGT 262227 ||||||||| |||||||| Sbjct 176705 CCTGTGCACGGAGATCGT 176722 Score = 100 bits (110), Expect = 4e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| |||||||||||||| ||||| || |||||| Sbjct 174055 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAGCAG 174114 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | |||||||||||||| | |||| Sbjct 174115 TGTGCCCTCATCTCCAAGTCTGCCGGCGGCATCGGCCTCGCCG 174157 >seq2307 Length=329114 Score = 107 bits (118), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 724952 GCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCG 725011 |||||| ||| |||| ||||| ||||||||||| |||||||| |||||| | || || Sbjct 201679 GCCATC-TCCTCCAAGGCCATGAGCATCATGAACTCCTTTGTCAATGACATGTTTGAGCG 201621 Query 725012 CATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCG 725071 | | | | | |||||| |||||||| | | || | | || ||| ||| || || Sbjct 201620 CCTGGCCTCGGAGGCCTCGCGCCTGGCCCAGTACAGCCACCGTGCCACCATCACCAGCCG 201561 Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 ||| | ||||| ||| | || | ||| ||| || ||||||| |||||||||||| Sbjct 201560 TGAGGTGCAGACGGCCACCAGGCTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTCTC 201501 Query 725132 CGAGGGCACCA 725142 ||||||||||| Sbjct 201500 CGAGGGCACCA 201490 >seq2912 Length=3111161 Score = 104 bits (114), Expect = 3e-16 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| |||||| ||| | |||||||||| ||||| Sbjct 2001001 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 2000942 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 2000941 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 2000889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177528306759146