Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 179 5e-39
seq1439 134 2e-25
seq2350 116 5e-20
seq2307 107 3e-17
seq2912 104 3e-16
>seq1180
Length=1499208
Score = 179 bits (198), Expect = 5e-39
Identities = 178/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || ||| |||||
Sbjct 1474529 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAAGCCATG 1474582
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 1474583 RGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 1474642
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 1474643 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 1474702
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 1474703 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1474751
Score = 109 bits (120), Expect = 8e-18
Identities = 115/150 (77%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 1470758 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1470705
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 1470704 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 1470645
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063
||||||| || |||||||||| ||| |||
Sbjct 1470644 CTGGCGCACTACAACAAGCGCTCCACCATC 1470615
Score = 109 bits (120), Expect = 8e-18
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092
|||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 1485954 CCTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCG 1485895
Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 1485894 GCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1485845
>seq1439
Length=7134548
Score = 134 bits (148), Expect = 2e-25
Identities = 177/244 (73%), Gaps = 6/244 (2%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | ||||||||||||| |||||||| || || || || ||||
Sbjct 5622533 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCATCCTGACAC-----GGGCATC- 5622480
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||| |
Sbjct 5622479 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATTGCT 5622420
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
|| ||| |||||||| | | ||||||||| ||| ||| | || ||||||
Sbjct 5622419 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGTTCCACCATCACATCCCGGGAGATC 5622360
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| |||||||||||| | | | || || ||||||| ||||||||| |||||||||
Sbjct 5622359 CAGACAGCCGTGCGCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGC 5622300
Query 725139 ACCA 725142
||||
Sbjct 5622299 ACCA 5622296
>seq2350
Length=253660
Score = 116 bits (128), Expect = 5e-20
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| |||||
Sbjct 176586 CAGCTCTGGTACGCCATCATCGAGTCCCAGACTGAGACTGGCACCCCCTACATGCTCTAC 176645
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209
|||||| || |||| || ||||||||||||||||||||||||| | || | |||
Sbjct 176646 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 176704
Query 262210 CCTGTGCACCGAGATCGT 262227
||||||||| ||||||||
Sbjct 176705 CCTGTGCACGGAGATCGT 176722
Score = 100 bits (110), Expect = 4e-15
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029
||||| ||| || |||||||| ||| |||||||||||||| ||||| || ||||||
Sbjct 174055 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAGCAG 174114
Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072
|| || |||||||||||| | |||||||||||||| | ||||
Sbjct 174115 TGTGCCCTCATCTCCAAGTCTGCCGGCGGCATCGGCCTCGCCG 174157
>seq2307
Length=329114
Score = 107 bits (118), Expect = 3e-17
Identities = 139/191 (73%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 724952 GCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCG 725011
|||||| ||| |||| ||||| ||||||||||| |||||||| |||||| | || ||
Sbjct 201679 GCCATC-TCCTCCAAGGCCATGAGCATCATGAACTCCTTTGTCAATGACATGTTTGAGCG 201621
Query 725012 CATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCG 725071
| | | | | |||||| |||||||| | | || | | || ||| ||| || ||
Sbjct 201620 CCTGGCCTCGGAGGCCTCGCGCCTGGCCCAGTACAGCCACCGTGCCACCATCACCAGCCG 201561
Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131
||| | ||||| ||| | || | ||| ||| || ||||||| ||||||||||||
Sbjct 201560 TGAGGTGCAGACGGCCACCAGGCTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTCTC 201501
Query 725132 CGAGGGCACCA 725142
|||||||||||
Sbjct 201500 CGAGGGCACCA 201490
>seq2912
Length=3111161
Score = 104 bits (114), Expect = 3e-16
Identities = 92/114 (81%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||||||||| || ||||| |||||| ||| | |||||||||| |||||
Sbjct 2001001 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 2000942
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | ||||| ||| ||||||||||||||||| ||||| || ||||||||
Sbjct 2000941 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 2000889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177528306759146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |