Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2369 132 7e-26
seq2912 129 8e-25
>seq2369
Length=237747
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || | ||||||||| || || | ||| |
Sbjct 220111 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 220052
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 220051 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 219992
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 219991 CAACCACTCTCTCACC 219976
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 218029 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTA 217970
Query 39854 AA 39855
||
Sbjct 217969 AA 217968
>seq2912
Length=3111161
Score = 129 bits (142), Expect = 8e-25
Identities = 103/124 (83%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | |||||||||||| |||||||||||||||| || | || |
Sbjct 1998341 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1998400
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| |||||||||||||| ||||| || |||||||| |
Sbjct 1998401 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 1998460
Query 39759 CAAC 39762
| ||
Sbjct 1998461 CTAC 1998464
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370
||||| |||||||| | ||||||||||| || || ||||| || || || || ||||||
Sbjct 1997108 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 1997167
Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
|||| || || ||||||||||| ||||| |||||
Sbjct 1997168 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1997202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686883616206120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |