Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2912 109 4e-19
seq2535 107 2e-18
seq2369 89.7 4e-13
>seq2912
Length=3111161
Score = 109 bits (120), Expect = 4e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||||
Sbjct 2000157 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 2000098
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||||||||| || || || ||||| || |||
Sbjct 2000097 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 2000050
>seq2535
Length=4254303
Score = 107 bits (118), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| ||||| || || ||| | || ||||| || ||| ||||||||| |||
Sbjct 4140848 TGATGGCTTTGCCTCCRTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 4140907
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || ||| | ||||| || || || |||||||||||||| || || || || || || |
Sbjct 4140908 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCCA 4140967
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| ||| | |||||||| || |||||||| || || ||
Sbjct 4140968 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 4141004
>seq2369
Length=237747
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194
|| || ||||| | ||||||||||| |||||||| || || ||||| || |||||||||
Sbjct 219988 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 220047
Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254
| ||||| | || |||||||||| ||||| || || ||||| | || || | |||
Sbjct 220048 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 220107
Query 44255 GA 44256
||
Sbjct 220108 GA 220109
Score = 82.4 bits (90), Expect = 6e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987
|||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || |||
Sbjct 216306 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 216365
Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||||| | || ||||| || ||||||||||||
Sbjct 216366 TACAGCTTGCTCATAGACACCTACATCAAAGAT 216398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397441792562665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |