Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2502 152 2e-31 seq2613 100 9e-16 seq1191 95.1 4e-14 seq2912 89.7 2e-12 >seq2502 Length=4400873 Score = 152 bits (168), Expect = 2e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||| || ||||| ||||| || || || || || ||||| | || || ||||| || Sbjct 928788 ACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCC 928729 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || ||||| ||||||||||| || | ||||| |||||||| || ||||| |||||||| Sbjct 928728 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 928669 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || ||||| ||||| ||||| | ||| || || ||||| || || | |||||| Sbjct 928668 ATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATTGTCTTG 928609 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || ||||| |||||||| Sbjct 928608 CCCGTCAGGGTCTTGACAAAGATCTGCAT 928580 >seq2613 Length=3979170 Score = 100 bits (110), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 183252 GCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCT 183311 || || |||||||||||||| || || || |||||||||||||| |||||| || Sbjct 807849 GCCTGCACAGCTGCACCATAGGCCACWGCCTCATCTGGGTTAATGCCACGAGAAGGCTCC 807790 Query 183312 TTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCG 183371 || ||||| || || ||| || || || || ||||| || || | |||||| ||||| Sbjct 807789 TTCCCATTGAAGAACTCTTTAACCAGCTGCTGGATTTTGGGGATGCGAGTTGATCCACCA 807730 Query 183372 ACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCA 183431 || | || | ||||| |||| | || | | | ||||||| | |||||| | | Sbjct 807729 ACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCTGA 807670 Query 183432 ACAGGGTCCATAGT 183445 ||||| | |||||| Sbjct 807669 ACAGGCTTCATAGT 807656 Score = 98.7 bits (108), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 |||||||| || ||||| ||||| || || || ||| || || || || || ||| Sbjct 806981 ACTGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGGGAGAAGAACATCCTT 807037 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | |||||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 807038 GTGTTCGACCTGGGTGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAATGGAGTC 807097 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| |||||| || || | ||||||||||| ||||| Sbjct 807098 TTTGAAGTTGTGGCTACTAATGGTGACACTCACTTGGGTGGAGAAGACTTTGA 807150 >seq1191 Length=1474021 Score = 95.1 bits (104), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| || || ||||||| ||||||||||| | Sbjct 1461983 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACAAAAGACG 1462042 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||| || ||| | || || || | || || ||||| ||||| ||||| || | Sbjct 1462043 CTGGAACCATYGCAGGGCTCAACGTCCTGCGGATCATCAATGAGCCCACAGCTGCTGCCA 1462102 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| || ||||| || || Sbjct 1462103 TTGCCTACGGGCTGGACAA 1462121 >seq2912 Length=3111161 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | ||| || ||||| || | |||||||||||| ||||| | Sbjct 1998338 ATACCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 1998397 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| ||| |||| Sbjct 1998398 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 1998457 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 1998458 AGGCTACTA 1998466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515197458160199