Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 152 2e-31
seq2613 100 9e-16
seq1191 95.1 4e-14
seq2912 89.7 2e-12
>seq2502
Length=4400873
Score = 152 bits (168), Expect = 2e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588
||||| || ||||| ||||| || || || || || ||||| | || || ||||| ||
Sbjct 928788 ACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCC 928729
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
|| ||||| ||||||||||| || | ||||| |||||||| || ||||| ||||||||
Sbjct 928728 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 928669
Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
|| || ||||| ||||| ||||| | ||| || || ||||| || || | ||||||
Sbjct 928668 ATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATTGTCTTG 928609
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || ||||| ||||||||
Sbjct 928608 CCCGTCAGGGTCTTGACAAAGATCTGCAT 928580
>seq2613
Length=3979170
Score = 100 bits (110), Expect = 9e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 183252 GCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCT 183311
|| || |||||||||||||| || || || |||||||||||||| |||||| ||
Sbjct 807849 GCCTGCACAGCTGCACCATAGGCCACWGCCTCATCTGGGTTAATGCCACGAGAAGGCTCC 807790
Query 183312 TTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCG 183371
|| ||||| || || ||| || || || || ||||| || || | |||||| |||||
Sbjct 807789 TTCCCATTGAAGAACTCTTTAACCAGCTGCTGGATTTTGGGGATGCGAGTTGATCCACCA 807730
Query 183372 ACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCA 183431
|| | || | ||||| |||| | || | | | ||||||| | |||||| | |
Sbjct 807729 ACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCTGA 807670
Query 183432 ACAGGGTCCATAGT 183445
||||| | ||||||
Sbjct 807669 ACAGGCTTCATAGT 807656
Score = 98.7 bits (108), Expect = 3e-15
Identities = 126/173 (73%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774
|||||||| || ||||| ||||| || || || ||| || || || || || |||
Sbjct 806981 ACTGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGGGAGAAGAACATCCTT 807037
Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834
| || || | |||||||| ||||||||||| || || || ||| |||| | ||| |
Sbjct 807038 GTGTTCGACCTGGGTGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAATGGAGTC 807097
Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
||||||||| || ||| |||||| || || | ||||||||||| |||||
Sbjct 807098 TTTGAAGTTGTGGCTACTAATGGTGACACTCACTTGGGTGGAGAAGACTTTGA 807150
>seq1191
Length=1474021
Score = 95.1 bits (104), Expect = 4e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
|||| || | ||||| ||||||||||| || || ||||||| ||||||||||| |
Sbjct 1461983 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACAAAAGACG 1462042
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| | ||| || ||| | || || || | || || ||||| ||||| ||||| || |
Sbjct 1462043 CTGGAACCATYGCAGGGCTCAACGTCCTGCGGATCATCAATGAGCCCACAGCTGCTGCCA 1462102
Query 349728 TTGCATATGGGCTTGATAA 349746
|||| || ||||| || ||
Sbjct 1462103 TTGCCTACGGGCTGGACAA 1462121
>seq2912
Length=3111161
Score = 89.7 bits (98), Expect = 2e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778
|| |||||||||| || | ||| || ||||| || | |||||||||||| ||||| |
Sbjct 1998338 ATACCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 1998397
Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838
| |||| |||||| |||| ||||| || ||||| || || ||||| ||| ||||
Sbjct 1998398 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 1998457
Query 223839 ACGCTACTA 223847
| |||||||
Sbjct 1998458 AGGCTACTA 1998466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515197458160199
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |