Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1682 96.9 4e-15
seq2602 91.5 2e-13
seq2350 87.8 2e-12
seq2369 86.0 7e-12
>seq1682
Length=1038807
Score = 96.9 bits (106), Expect = 4e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | |||||| | ||||| || || ||||| || ||||||||
Sbjct 15531 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTCCCTCCRTGCAGCCTTGTGCCAAACTGA 15590
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144
|| ||||| ||| | ||||||||||||| |||||| || ||||||||||| ||
Sbjct 15591 CCGATGGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 15646
>seq2602
Length=4009205
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| ||| ||||||||||| |||||| ||| | || || || ||
Sbjct 137375 GTGAAAATATAACGAGGGCTGGCAGCATCCTTTCCACCATGAAGTCTGGTGCCAAACTGG 137434
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | || |||| ||||| || |||||||| |||||||||||||||
Sbjct 137435 CCAATAGGTTGTAGCAGATTCACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 137494
Query 117425 ATCGT 117429
|| ||
Sbjct 137495 ATAGT 137499
>seq2350
Length=253660
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
|||||||||||| || |||||||| ||| ||||| ||||||||||| || || |||
Sbjct 174052 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 174111
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427
||||||||| ||||||||||| | || || |||||
Sbjct 174112 CAGTGTGCCCTCATCTCCAAGTCTGCCGGCGGCATCGG 174149
>seq2369
Length=237747
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | | |||||||| || || | |||||||
Sbjct 220109 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 220050
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| |||||||| |||||||||||||| || ||||||||
Sbjct 220049 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 219990
Query 74892 AC 74893
||
Sbjct 219989 AC 219988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547195937693400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |