Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1682 96.9 4e-15 seq2602 91.5 2e-13 seq2350 87.8 2e-12 seq2369 86.0 7e-12 >seq1682 Length=1038807 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||| || || ||||| || |||||||| Sbjct 15531 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTCCCTCCRTGCAGCCTTGTGCCAAACTGA 15590 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || ||||| ||| | ||||||||||||| |||||| || ||||||||||| || Sbjct 15591 CCGATGGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 15646 >seq2602 Length=4009205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| |||||| ||| | || || || || Sbjct 137375 GTGAAAATATAACGAGGGCTGGCAGCATCCTTTCCACCATGAAGTCTGGTGCCAAACTGG 137434 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || |||| ||||| || |||||||| ||||||||||||||| Sbjct 137435 CCAATAGGTTGTAGCAGATTCACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 137494 Query 117425 ATCGT 117429 || || Sbjct 137495 ATAGT 137499 >seq2350 Length=253660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 174052 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 174111 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| ||||||||||| | || || ||||| Sbjct 174112 CAGTGTGCCCTCATCTCCAAGTCTGCCGGCGGCATCGG 174149 >seq2369 Length=237747 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | | |||||||| || || | ||||||| Sbjct 220109 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 220050 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 220049 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 219990 Query 74892 AC 74893 || Sbjct 219989 AC 219988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195937693400