Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2502 179 4e-40
seq2350 122 1e-22
>seq2502
Length=4400873
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || ||||| || || ||| | ||
Sbjct 928580 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACAATCACTCTGGAAGTCGAGCCCAGT 928639
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| | || || || || ||||| ||||| || || ||||| ||||||
Sbjct 928640 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 928699
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| || || || ||||||| |||||||| | ||||| ||
Sbjct 928700 CAGAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 928759
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || || |||||||| || || |||||
Sbjct 928760 ATCCAGAAGGAGTCAACTCTGCACCTTGTCTTGCGCCTGCGGGGTGG 928806
Score = 165 bits (182), Expect = 9e-36
Identities = 159/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | |
Sbjct 927983 AATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCCAG 928042
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | ||||| || || || |||||||| || || ||||| |||||
Sbjct 928043 CGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 928102
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || ||||| ||||| ||||| || ||||||| |||||||| | ||||| ||
Sbjct 928103 GCAGAGGCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCCGACTACAA 928162
Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608
|||| || ||||||||||| ||
Sbjct 928163 CATCCAGAAAGAATCCACTCTGCA 928186
>seq2350
Length=253660
Score = 122 bits (134), Expect = 1e-22
Identities = 162/221 (73%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACT 80629
||||||| ||| || | || ||||| ||||||| | | ||||||||||||| | ||
Sbjct 180198 CCGGAGAACCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 180139
Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTGT 80688
|| |||||| ||| || ||| |||||||| | || ||| | || | | |||||
Sbjct 180138 CC---AGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGCAGC-TGGGCCTGG 180083
Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748
||| ||||| | || | ||| | ||||| |||| |||||||| || |||||||||
Sbjct 180082 GGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCTTGCACGCCGATG 180023
Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789
|||| |||||||| ||| ||| || |||||||||| |||
Sbjct 180022 CCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 179982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570289490994960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |