Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1223 132 6e-26 >seq1223 Length=7284131 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| || | | |||||||||| || |||||| | ||||| | |||||||| Sbjct 1989900 GCTTTATGGTGGTACTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1989959 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||||||||||||||||||| |||| || | || || || |||||||| |||||||| Sbjct 1989960 CTGAGAAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1990019 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || ||||| ||| ||||||| ||||| Sbjct 1990020 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 1990060 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 32826 GGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTAT 32885 |||||| | ||||| ||||| || || ||| | ||||| ||||| || ||||| | ||| Sbjct 1992272 GGACAG-CTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTAT 1992330 Query 32886 TACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTA 32945 ||||||||| |||| || ||| || | ||||| || ||||||||| |||||| Sbjct 1992331 TACGGATTAGCAGCTTGCGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATATTTG 1992390 Query 32946 ACTATCATACAATTG 32960 || || | |||||| Sbjct 1992391 ACCATATTGCAATTG 1992405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603158685883920