Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2535 122 8e-23
>seq2535
Length=4254303
Score = 122 bits (134), Expect = 8e-23
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633
|||||||| | || || ||||| |||| ||||| ||||| || ||||| || ||
Sbjct 4140847 CTGATGGCTTTGCCTCCRTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTG 4140906
Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693
|| ||||| |||||||| | || ||||||||||| |||| ||||| ||||| |||||
Sbjct 4140907 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCC 4140966
Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
|| || | |||||||| |||||||| || ||||||
Sbjct 4140967 AGCTATTCACTGCTCACATACATGATTGCCCATGTC 4141002
Score = 122 bits (134), Expect = 8e-23
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
|||||| || |||||||| |||||||| | || || ||||| ||||| ||||| ||||
Sbjct 4141002 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCTAG 4140943
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||||||||| || | |||||||| ||||| |||| || ||||| || |||||
Sbjct 4140942 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 4140883
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771
||||| |||| ||||| || || | ||||||||
Sbjct 4140882 CTGGCAAAGGGCATGGCAYGGAGGCAAAGCCATCAG 4140847
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | || |||||||| ||||| ||| | ||||| || || || |
Sbjct 4137169 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCCCGTGAGTTCC 4137228
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||| |||| ||| ||| | | |||||||| || || || || || || || ||||
Sbjct 4137229 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTAGGACCAGTGTATGGTTTCC 4137288
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| || ||||| || || ||
Sbjct 4137289 AGTGGAGGCATTTTGGAGCAGAATA 4137313
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || ||||| || ||||||||||| || || || || || || || ||||||||
Sbjct 4137313 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCTAAATCACCCTCCTCT 4137254
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | ||| ||| |||| ||||| || || || ||||| | ||| ||||| ||||||
Sbjct 4137253 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAATCTTC 4137194
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
|| || | |||||||| ||||
Sbjct 4137193 ACACCTTTTGCAGAGAGCTCTTTGG 4137169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448245965579760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |