Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2502 167 5e-36 seq2266 95.1 3e-14 >seq2502 Length=4400873 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||||||||| ||||| ||||| || |||||||| || || | ||||| | ||||| || Sbjct 928789 GACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTC 928730 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||| || || || ||||| || | || ||||||||||| | |||||||| ||||| Sbjct 928729 CAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTG 928670 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| ||| || ||||| ||||||||| | || || || |||||||| ||||| Sbjct 928669 GATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATTGTCTT 928610 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| | |||||| Sbjct 928609 GCCCGTCAGGGTCTTGACAAAGATCTGCAT 928580 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||| ||||| |||||||| || || | ||||| | ||||| Sbjct 928195 AGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCC 928136 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || || | || ||||||||||| | ||||||||||| Sbjct 928135 TCCAGCTGCTTGCCAGCGAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 928076 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| | || ||||| || ||||| ||| Sbjct 928075 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTC 928016 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| || || | ||||||||| Sbjct 928015 TTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 927981 >seq2266 Length=420336 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||| || ||||||||| |||||||||||| | || |||||| Sbjct 142773 CCTTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 142714 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || |||||||| || || || || | |||||| || Sbjct 142713 AGGGTGATGGTTTTGCCCGTGAGGGTTTTCACGAAGATCTGCATCTT 142667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159108440154545