Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq2535 102 7e-17
seq2045 91.5 1e-13
>seq2535
Length=4254303
Score = 102 bits (112), Expect = 7e-17
Identities = 123/162 (76%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075
||||||||||||||||| || ||||| ||||| | || ||||| || ||| |||| |||
Sbjct 4137301 AAATGCCTCCACTGGAAACCATACACTGGTCCTAAATCACCCTCCTCTCTGGTGCT-GAA 4137243
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||| |||| || || | ||| || || || ||||| ||||| || || || |
Sbjct 4137242 ACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 4137183
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177
||||||||||||| ||||| || || || || || |||||
Sbjct 4137182 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 4137143
>seq2045
Length=838734
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| || | || | |||||| | | ||| | ||||| || ||
Sbjct 513547 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 513488
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || |||||||||||||||| ||||||| ||||||
Sbjct 513487 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCGTTCTGTTTACCT 513440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406148681315638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |