Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq2912 116 3e-21
seq2369 113 4e-20
>seq2912
Length=3111161
Score = 116 bits (128), Expect = 3e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||| || || |||||||||||||| || | ||| |||||||| ||||| || ||
Sbjct 1998343 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1998402
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||| || | ||||| || ||||||||||| || ||||| || || ||||| |||
Sbjct 1998403 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 1998462
Query 4692 ACTA 4695
||||
Sbjct 1998463 ACTA 1998466
Score = 89.7 bits (98), Expect = 4e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876
||| || ||||| || || || || |||||||| |||||||||||||| || ||||||||
Sbjct 2000056 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 2000115
Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || | ||||||||| | ||| |||||
Sbjct 2000116 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 2000154
>seq2369
Length=237747
Score = 113 bits (124), Expect = 4e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || || || || ||||| ||||| | || ||||| ||
Sbjct 220109 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 220050
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 220049 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 219990
Query 4692 AC 4693
||
Sbjct 219989 AC 219988
Score = 100 bits (110), Expect = 2e-16
Identities = 98/125 (78%), Gaps = 1/125 (1%)
Strand=Plus/Minus
Query 4927 TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985
||||| || |||||||| ||||| || || ||||||||||| ||||| |||| |||||||
Sbjct 215389 TTTCTCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCGAAAAATGCCAGAACATGA 215330
Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045
|| |||||||| | ||| || | || || || |||||||| || | || || | |||
Sbjct 215329 GAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTGACAAA 215270
Query 5046 TCAAC 5050
|||||
Sbjct 215269 TCAAC 215265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427034334711689
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |