Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2912 113 6e-20 seq2369 102 1e-16 seq2350 91.5 2e-13 >seq2912 Length=3111161 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | |||||||||||| ||||| |||||||||| ||| | || || Sbjct 1998343 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1998402 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 1998403 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 1998462 Query 46774 AC 46775 || Sbjct 1998463 AC 1998464 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | |||||||||||||| || ||||| || || || || |||||| Sbjct 1997108 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 1997167 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || || |||||||| || ||||| ||||| Sbjct 1997168 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1997202 >seq2369 Length=237747 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| || || | ||| || Sbjct 220109 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 220050 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 220049 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 219990 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 219989 ACCACTCTCTCACC 219976 >seq2350 Length=253660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||||||||| || || || |||||||| || || || || || ||||||||||| || Sbjct 176719 ATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 176660 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || || |||||||| || || | | || || ||||| ||| |||| || ||||| || Sbjct 176659 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATGATG 176600 Query 76448 GATTTCCAGA 76457 | | ||||| Sbjct 176599 GCGTACCAGA 176590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712908262042560