Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1659 212 9e-50 seq2613 113 6e-20 >seq1659 Length=6985037 Score = 212 bits (234), Expect = 9e-50 Identities = 225/297 (76%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||||||| | ||||| || ||| | | || Sbjct 4733503 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGACGAGCTTCTGCAGGGAGGCTG 4733444 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || |||||||||||||||||||||||| | |||| Sbjct 4733443 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 4733384 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || |||||||| || ||||||| ||| | ||| Sbjct 4733383 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGCGCCCCCATCTCCACCATGG 4733324 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| || |||||||| ||||||| | || | ||||||||||| Sbjct 4733323 TCTCGCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGCCCTGGGTACAGCTCCA 4733264 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || |||||||||||||||| Sbjct 4733263 TGGCGTCGATGTCCCCGTACAGCTCCTCCAGCTCCGCCGCCATCTCCTTTTCTCCTG 4733207 Score = 116 bits (128), Expect = 5e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||||||| ||| || || || | | || || Sbjct 4731570 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGT 4731511 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | ||||| || | |||||| || | |||||||| |||||||||||||| ||||| || Sbjct 4731510 ATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 4731451 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| |||| || || || | | ||| || |||||||| | ||| || Sbjct 4731450 ACCAGCCCAAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGTGGG 4731391 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| |||| || || ||||| || || | |||||| Sbjct 4731390 TACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATCTCTCCATTGATCATC 4731331 Query 9484 TG 9485 || Sbjct 4731330 TG 4731329 >seq2613 Length=3979170 Score = 113 bits (124), Expect = 6e-20 Identities = 182/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | |||| ||| ||| |||||| || || || || | | ||| Sbjct 1607727 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCTG 1607786 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| | || || |||| || || || ||||| ||||||||| |||||| Sbjct 1607787 TCTTAACAATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCCGGGG 1607846 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| || | | || || || ||||| || ||||| || | ||| | |||| Sbjct 1607847 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1607906 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| ||||||| |||| || || | ||| || || | ||| | ||||| Sbjct 1607907 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAACAAGCCTGGGTAAAACTCCA 1607966 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| |||| |||||| || || Sbjct 1607967 GAGCATCGATGTCTCCATACAG 1607988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716850517504320