Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1659 212 9e-50
seq2613 113 6e-20
>seq1659
Length=6985037
Score = 212 bits (234), Expect = 9e-50
Identities = 225/297 (76%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| |||||||||||| | ||||| || ||| | | ||
Sbjct 4733503 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGACGAGCTTCTGCAGGGAGGCTG 4733444
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||||||| |||| ||||| | || |||||||||||||||||||||||| | ||||
Sbjct 4733443 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 4733384
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| |||| |||| || || || |||||||| || ||||||| ||| | |||
Sbjct 4733383 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGCGCCCCCATCTCCACCATGG 4733324
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || |||||||| || |||||||| ||||||| | || | |||||||||||
Sbjct 4733323 TCTCGCCAAAGATGGCCCCAGGCCGGGGCTTCTCCACCAGCAGCCCTGGGTACAGCTCCA 4733264
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| |||| ||| ||||| || || || || || || ||||||||||||||||
Sbjct 4733263 TGGCGTCGATGTCCCCGTACAGCTCCTCCAGCTCCGCCGCCATCTCCTTTTCTCCTG 4733207
Score = 116 bits (128), Expect = 5e-21
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||| || ||||||||||| || |||||||| ||| || || || | | || ||
Sbjct 4731570 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGT 4731511
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| ||||| || | |||||| || | |||||||| |||||||||||||| ||||| ||
Sbjct 4731510 ATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 4731451
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
||||| ||||| |||| || || || | | ||| || |||||||| | ||| ||
Sbjct 4731450 ACCAGCCCAAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGTGGG 4731391
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|| | ||| | |||| ||| |||| || || ||||| || || | ||||||
Sbjct 4731390 TACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATCTCTCCATTGATCATC 4731331
Query 9484 TG 9485
||
Sbjct 4731330 TG 4731329
>seq2613
Length=3979170
Score = 113 bits (124), Expect = 6e-20
Identities = 182/262 (69%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
||||||| | |||| ||| ||| |||||| || || || || | | |||
Sbjct 1607727 GGAACGCCACATACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCTG 1607786
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||| || ||| | || || |||| || || || ||||| ||||||||| ||||||
Sbjct 1607787 TCTTAACAATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCCGGGG 1607846
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| || | | || || || ||||| || ||||| || | ||| | ||||
Sbjct 1607847 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1607906
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| || || || ||| ||||||| |||| || || | ||| || || | ||| | |||||
Sbjct 1607907 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAACAAGCCTGGGTAAAACTCCA 1607966
Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550
||| |||| |||||| || ||
Sbjct 1607967 GAGCATCGATGTCTCCATACAG 1607988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716850517504320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |