Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3826 91.5 2e-13 >seq3826 Length=16266510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| ||||| || || |||||||| || | || ||||| ||||| ||||| Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | |||||||| || | || || || ||||||||||| || || || || | |||||| | Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 17106 CGATTAATCGTTC 17118 | | || ||||| Sbjct 9775553 CTACTACACGTTC 9775541 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 |||| || || ||||| || || ||||||||||| || || ||||| |||||||| |||| Sbjct 9772542 TTATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCT 9772483 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 | || || ||||| || || ||||| | || || ||||| Sbjct 9772482 GGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTC 9772443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517499706643920