Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3201 96.9 3e-15 >seq3201 Length=36968188 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||||| |||| |||| |||| || || || | | || || || || |||| ||| Sbjct 931483 GATATTTCCTTGATGGCTTTACCCCCCTGCCATGCTCTCTGCCAATTCTATGTTGTAAAT 931542 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 ||||| | || ||||| | || |||||||| || |||||||| || || || || ||| Sbjct 931543 GGTGAGCTTTCTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTC 931602 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | ||| |||| || || ||||| | || ||||| ||||| || || Sbjct 931603 AACATTGCCAGTTATTCACTGCTCACGTACATGATTGCTCATGTGACAGGCCTAAA 931658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399469459633230