Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3201 104 2e-17 >seq3201 Length=36968188 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || ||||||||||||||| | || | || ||||| || |||||||| || ||||||||| Sbjct 931649 GTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGCACTCCT 931590 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871 | |||||||| | ||||| |||||||| || || ||||||| ||| | ||| ||||| Sbjct 931589 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACA-ACATA 931531 Query 101872 AAATTG 101877 ||||| Sbjct 931530 GAATTG 931525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||||||||| ||||| ||||| ||||| || || ||||| |||||||| | ||| |||| Sbjct 929013 CTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAATCCCCTT 928954 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| ||||| ||||||| || || | |||||||| |||||||||| Sbjct 928953 CCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCATCCCAAA 928894 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || | | || |||||||| Sbjct 928893 TCTTGACTCCCTTTTCAGACAGCTCTTT 928866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361219966898594