Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4704 116 4e-21 seq3826 105 8e-18 seq6834 87.8 2e-12 >seq4704 Length=24298902 Score = 116 bits (128), Expect = 4e-21 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 24133 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 16882170 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 16882111 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 ||||| ||||| | ||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 16882110 AGTCCAGGCATCAAGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 16882051 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 || |||||||| ||||| |||||||||| | ||| || || Sbjct 16882050 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 16882010 >seq3826 Length=16266510 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 24277 C 24277 | Sbjct 9775553 C 9775553 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 9772547 ATCTTTTATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 9772488 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || || || ||||| | ||| || || ||||| |||||| Sbjct 9772487 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 9772442 >seq6834 Length=1011959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 383476 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 383417 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 383416 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 383357 Query 54149 TCCAAGTATATGG 54161 |||| ||| |||| Sbjct 383356 TCCAGGTAAATGG 383344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 ||| || ||||| || || || ||||||||||| || | ||||| || || ||||| Sbjct 384675 TATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTGGTTGCTCTTCCG 384616 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 |||||| | |||||||| || ||| | || ||||| || ||| ||||||| || || || Sbjct 384615 GTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGGGACTCAATGAT 384556 Query 53878 CGCTTTCCAGA 53888 || | ||||| Sbjct 384555 GGCGTACCAGA 384545 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 391042 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 390983 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 || |||||||| |||||||| ||||| || || ||||| ||||| || Sbjct 390982 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 390936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593668951737120