Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2185 89.7 4e-13 >seq2185 Length=13751209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | ||| || || || || || |||||||| || ||||| |||||| Sbjct 8329527 GACAAAGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTTGCTGGGAAACAGCTGGAA 8329586 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || || |||| ||||||||||||||||| || || || ||| ||||| | Sbjct 8329587 GATGGCCGCACCCTGTCCGACTACAATATTCAGAAGGAGTCCACCCTGCACCTGGTGCTG 8329646 Query 29175 CGATTACGAGGAGG 29188 || || |||| || Sbjct 8329647 CGCTTGAGAGGTGG 8329660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428298966872570