Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5078 96.9 4e-15 >seq5078 Length=2056525 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || || || | |||||| |||| || | Sbjct 259162 CCTGGTGTCCGAACTGGTTGCAGGGGAAGCCCAGGACGAGCAGCCCGCGAGGCCCGTACC 259221 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||||||| | ||| ||| | || ||| ||||| | |||||||| || || | Sbjct 259222 GCTCCTGCAGCTCGTTGAGCTGCGTGAAGTCGCGGGCCGTGGTGCCTCAGAGCGAAGCCA 259281 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCC 83536 |||| || || | ||||||||| Sbjct 259282 CGTTGGAGACCAGGAGCACCCGGCCC 259307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608742814943760