Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2185 167 2e-36 seq6178 93.3 4e-14 seq4704 87.8 2e-12 seq1956 87.8 2e-12 >seq2185 Length=13751209 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| |||| || || ||| Sbjct 8329662 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329721 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| ||| | ||||| Sbjct 8329722 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8329780 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8329781 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8329840 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 8329841 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 8329889 Score = 158 bits (174), Expect = 1e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || |||||||| |||||||| |||| || || | Sbjct 8328974 AAACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCC 8329033 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | | |||| || || | |||||||| ||||| ||| | || Sbjct 8329034 CAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGA 8329093 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || || || |||||||| || | |||||||| ||||| Sbjct 8329094 CCAGCAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTA 8329153 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 8329154 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 8329205 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 8329434 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 8329493 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | |||||||| || || ||| | ||||| Sbjct 8329494 GACACCATCGAAAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCCCCTGACCA 8329552 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || ||||||||||| || | |||||||| ||||||||| Sbjct 8329553 GCAGAGGCTCATCTTTGCTGGGAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 8329612 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| |||| ||||| || ||| |||||||||| || ||| Sbjct 8329613 TATTCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 8329661 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| | || || || ||| Sbjct 8330118 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 8330177 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| ||| | ||||| Sbjct 8330178 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8330236 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8330237 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 8330296 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| || ||| ||||| ||||||| || Sbjct 8330297 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 8330344 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| || || ||| Sbjct 8329890 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329949 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | |||||||| ||||| ||| | ||||| Sbjct 8329950 GACACTATCGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCA 8330008 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || |||||||| || || | ||||| || ||||||||| Sbjct 8330009 GCAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACTCTGTCCGACTACAA 8330068 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 8330069 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 8330117 >seq6178 Length=21545174 Score = 93.3 bits (102), Expect = 4e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| |||||||||| |||||||| |||||||| || | ||| Sbjct 2683774 GGTATCCCCCCTGACCAGCAGCGACTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGC 2683833 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGG 40882 || || |||||||||||||||||||| || Sbjct 2683834 ACTCTGTCCGACTACAACATCCAGAAGGTGG 2683864 >seq4704 Length=24298902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || || ||||||| || || ||| || |||||||||| Sbjct 16882020 TGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATATTTT 16882079 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||| | ||||| || ||||||||| ||| |||||||| ||| | Sbjct 16882080 GGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGCAGAG 16882139 Query 117162 ACGAGG 117167 | |||| Sbjct 16882140 ATGAGG 16882145 >seq1956 Length=91387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| || || |||||||| || | |||| Sbjct 1992 GGCATCCCCCCCGACCAGCAGCGGCTGATCTTCGCTGGGAAGCAGCTGGAGGATGGGCGC 1933 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 ||||| |||||||||||||||||| Sbjct 1932 ACCCTTTCCGACTACAACATCCAGAA 1907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515173512937440