Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3201 104 2e-17 >seq3201 Length=36968188 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| || ||||| | || | || ||||| || |||||||| |||||||| ||| Sbjct 931649 GTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGCACTCCT 931590 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| | ||||| ||||| | ||| || ||||||| ||| | ||| ||||| Sbjct 931589 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACA-ACATA 931531 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 || || | | |||| |||||||| || ||||| Sbjct 931530 GAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCAT 931495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||| |||||| ||||||||||| ||||||||||| |||||||||||||| | || |||| Sbjct 929013 CTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAATCCCCTT 928954 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA 97516 | ||| | |||||| | ||||| || | | |||||||| |||||||||| Sbjct 928953 CCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCATCCCAAA 928894 Query 97517 T 97517 | Sbjct 928893 T 928893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346754017705580