Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3201 89.7 8e-13 >seq3201 Length=36968188 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 205716 TGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775 ||||| |||||| |||||| || |||||||| | |||||| ||||||||||| || || Sbjct 929024 TGTATTCATATCTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCC 928965 Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATCCATT 205835 |||||| ||||| |||| | | ||||| |||| | | | | ||||||||| Sbjct 928964 TAAATCCCCTTCCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATT 928905 Query 205836 TTCATCCCAAATATGGATTCCTTT 205859 |||||||||| | || ||| || Sbjct 928904 GGCATCCCAAATCTTGACTCCCTT 928881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755389009939200