Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2185 116 3e-21 >seq2185 Length=13751209 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || ||||| ||||| ||| || ||||| ||| Sbjct 8329646 CAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 8329587 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| ||||||| | |||||| || || || || || || ||||| Sbjct 8329586 TTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTTGTC 8329527 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | ||||| |||||| || ||| ||||| | ||| | || Sbjct 8329526 CTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGT 8329467 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || |||||||||||| Sbjct 8329466 CTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 8329433 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | |||||||| || || |||||||| ||| || ||||| ||| Sbjct 8330330 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 8330271 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| ||||||| | |||||| ||||| || ||||| || ||||| Sbjct 8330270 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8330211 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 8330210 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGT 8330151 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || || || ||||||||| Sbjct 8330150 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 8330117 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || ||||| |||||||| || ||||| ||| Sbjct 8329418 CAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATC 8329359 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| ||||||| | |||||| || || || |||||||||||||| Sbjct 8329358 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 8329299 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| ||||| || ||| ||||||| || | || Sbjct 8329298 CTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCAACCTCGAGAGTGATGGT 8329239 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 8329238 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433792891837048