Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4704 136 7e-27 seq5050 129 1e-24 >seq4704 Length=24298902 Score = 136 bits (150), Expect = 7e-27 Identities = 190/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 52066 GGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTATGGCCGCT 52125 || ||||| ||||| | ||||| |||||| ||||||||| || |||| | || || Sbjct 21446444 GGGGCTCATATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGAATTAGCTGCC 21446503 Query 52126 TGTGGTCCTAT-GTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATAATGCAGTT 52184 |||||||||| |||||| | ||| || ||||||||||| || | || ||| | || || Sbjct 21446504 TGTGGTCCTAAAGTTCAGCA-GTACCTCTGGTGGAAACGATACTTGACCATACTACAATT 21446562 Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | || | | ||||| || ||| ||||| || ||| || || Sbjct 21446563 GGTTCAGTTCCATGTGACTCTTAGCCATACAGCCTGGTCTATTTATATTAATTATCCCTT 21446622 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||| |||||||| || ||| || ||| ||||| || | | || || | |||||| Sbjct 21446623 TCCCAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTTATTCTCTTGTTTGA 21446682 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||| | | | ||||| || Sbjct 21446683 CAACTTCTACTATTGGACATATAA 21446706 >seq5050 Length=13523281 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||||||| | |||||||| || ||||||||||| || ||||||||||| Sbjct 8525083 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 8525142 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || |||| |||||||| || | ||||| || || || |||||||||| || ||||| Sbjct 8525143 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGCACCATGTTC 8525202 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| || || || ||| |||| ||||| || Sbjct 8525203 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 8525243 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || |||||||||||||| ||||| | ||||| |||||| ||||||||| || ||||| Sbjct 8527715 GCTTTTTTTGGAGCTCATATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGGA 8527774 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| |||| | || ||||| || ||||||||||| || | || ||| Sbjct 8527775 TTAGCTGCCTGTGGCCCTAAAGTTAGGAAGTACCTCTGGTGGAAACGATACTTGACCATA 8527834 Query 52177 ATGCAGTTGGTA 52188 | || |||||| Sbjct 8527835 CTACAATTGGTA 8527846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923114935523760