Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq6295 93.3 4e-14 >seq6295 Length=39348463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 125347 GGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGCTCGCCGN 125406 |||| ||| ||||| ||||||||| ||| || | |||||||||| ||||||| ||||| Sbjct 20418621 GGCG-GCACGAGCGGAAGAAGGGCTGCTCGCGGCTCTCCAGCTCGCCCGCCGCCCGCCGC 20418679 Query 125407 NNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGC--AGCAG-TGCTGGAAG 125463 | || || |||||| || | | |||||| ||| | ||||||||| Sbjct 20418680 AGCGCCTCGGCCGCGGGGCTGGGCGGCAGCGC---CGTGCCGCCCAGCCGGTGCTGGAAG 20418736 Query 125464 TAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGCT 125514 || || ||||||||| |||||| || |||||||| | | | | ||||||| Sbjct 20418737 TAGTCGGCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGGGCCCGGCATGGCT 20418787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509138848108800