Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3826 95.1 1e-14 seq4704 82.4 7e-11 >seq3826 Length=16266510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| || || || ||||||| ||||| ||| || Sbjct 9775671 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9775612 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 9775611 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 9775552 Query 16379 AC 16380 || Sbjct 9775551 AC 9775550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | |||||||| | ||||||||||||||||| ||||| || Sbjct 9777045 TTCGACATGACTCCCATCCTCTGATATTCTCCTACTCTCTTTTCAAAGAAGTTTGTCTTG 9776986 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | |||||| || |||||||| ||||| ||||| Sbjct 9776985 CCTTCAAGTGAAATGTTCTCCATAAAGTCAAATGGATT 9776948 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| || || || | ||| ||||||||||||||||| || ||||| || ||||| Sbjct 9772540 ATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCTGG 9772481 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || |||||||| || | |||||| | || || ||||| Sbjct 9772480 AAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTC 9772443 >seq4704 Length=24298902 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| |||||||| | ||| ||||| ||||| |||| |||||| || |||||| Sbjct 16875210 ATGTAAGTGTCTATTAGCAGACTGTACATCTCTGAGTGAACATTCTCAATGAGAATCTGA 16875151 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||| || || | |||||| | || |||||||| Sbjct 16875150 AAACCATAGAAACAGCGAGCTTCTGGGATCTGTACTTC 16875113 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | || ||||| || ||| || | | || ||| || | | Sbjct 16892625 TTAAAAATCTGCATCCAAAGTGAACACGTTGTCTGTTGTCTCTGCCATTACAGCAAAGCG 16892566 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| |||||||| || || |||||||| | ||||||||| || Sbjct 16892565 CTGATACTCTGAAACCCGCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTC 16892506 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 16892505 CATGAAATCAAAAGGGTTTTCTG 16892483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462470986748400