Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6295 271 5e-68 seq6231 167 2e-36 >seq6295 Length=39348463 Score = 271 bits (300), Expect = 5e-68 Identities = 681/1030 (66%), Gaps = 11/1030 (1%) Strand=Plus/Minus Query 107603 GCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAA 107662 |||| |||| ||||| | || | ||||| ||| | || ||||| | | ||| | Sbjct 31578718 GCGGGCGCCGCTCACGCCCGCCGACTACCTGAACCTGACGGCGGACTGCGCGAGCTACCG 31578659 Query 107663 GGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGC 107722 |||| || ||| | ||| | | ||||| | || ||| | |||||| | || Sbjct 31578658 CGCCCGGCGGCGCTTCGTGCAGGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGC 31578599 Query 107723 CTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA 107782 || ||| ||||| |||| || || | || || || || |||||||| |||||||| Sbjct 31578598 CTTCTCCATGGTCATCCACGACCAGCTGGAGCTGTTCGAGCGCCTGCTGCGGGCCGTGTA 31578539 Query 107783 TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGA 107842 || || |||||| | ||||| || |||||||| | ||| | || | | ||| | Sbjct 31578538 CGCGCCGCAGAACCTGTACTGCGTGCACGTGGACGCCAAGGCGCCCGCTGCCTTCCTGCA 31578479 Query 107843 GGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCC 107902 ||| || ||| | ||||||||||||| |||||| ||||||| | ||| | Sbjct 31578478 GGCCGTGCGTGCCCTGGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGCA 31578419 Query 107903 GGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT 107962 || || || || |||||||| | |||| || ||||| ||||| ||||| ||| |||| Sbjct 31578418 CGTCGTCTACGCGTCCTGGTCGCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGCT 31578359 Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 | | | | ||| ||| ||| | || || || ||||| || ||||||||| | || Sbjct 31578358 GCGCCGGCCCGAGCCCTGGCGCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCAA 31578299 Query 108023 GACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 |||||| |||||||| || | |||||| || || | || |||| |||||||| Sbjct 31578298 GACCAACGCCGAGATCGTGCGGGCCCTGCAGCTGCTCCGCGGCCGCAACAACATGGAGTC 31578239 Query 108083 TGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA--- 108139 ||| || || | ||| | |||||| |||| | || || | || Sbjct 31578238 AGAGCGGCCCTCGGCCATCAAGCGCGAGCGCTGGCGCTACCAGCACGAAGTATCTGAGGG 31578179 Query 108140 ---CACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCC--TGATAATTTACC-CAT 108193 ||| ||| | ||| | || ||| ||| || || || | | | ||| Sbjct 31578178 TGGCACCCTGGTGCGCACCGGGGTGACCAAGAGCCCCCCGCCGCTGGGCAGTGCCAACAT 31578119 Query 108194 GTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA 108253 |||||| || || ||||| | |||| | || | ||| || | |||||| | || | Sbjct 31578118 GTTCACGGGTAACGCCTACATAGTGGTGACGCGGGGCTTCGTGCGCCATGTCCTGGAGAG 31578059 Query 108254 CCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCT 108313 ||| | | || | ||| | | |||| | | ||||| || ||||||||||| ||| | Sbjct 31578058 CCCCGAGGCGCAGCGCCTGCTGGCCTGGGCCCAGGACACGTACAGCCCCGACGAGCACGT 31577999 Query 108314 CTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTA 108373 |||||||| || ||||| ||| | |||| ||| | | || | || |||||| Sbjct 31577998 GTGGGCCACGCTGCAGCGCCTGCCGGGCGTGCCGGGCGCCTTGCCACCCAACGACAAGTA 31577939 Query 108374 TCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA 108433 | | || ||||||| || | || | | ||||||||||| |||| ||||| || Sbjct 31577938 CGAGCTGTCTGACATGAACTCCCTGGCGCGCTTAGTCAAGTGGCACTACCTGGAGGGTGA 31577879 Query 108434 TGT-CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 | |||| |||||| || || |||||||| | || | || || |||||||||| Sbjct 31577878 CATACAGCG-GGGGGCACCCTACCCACCCTGCACCGGCACGCACCGCCACGCCATCTGCA 31577820 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 | ||||| ||||||||| |||||| |||||| | || ||||| |||| ||||||| Sbjct 31577819 TCTACGGCCTGGGGGACCTGCCCTGGATACTCCAGCAGCAGCACCTGCTGGCCAACAAGT 31577760 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 |||||| ||| ||||| || | | |||||||| | || ||| |||| || || ||| Sbjct 31577759 TTGACCTGAGTGTGGACGAGCAGGCGGTGCAGTGCCTGGAGGAGCACCTGCGCCACGAGG 31577700 Query 108613 CCATCTATGG 108622 | ||| ||| Sbjct 31577699 CGCTCTTTGG 31577690 Score = 159 bits (176), Expect = 2e-34 Identities = 282/408 (69%), Gaps = 5/408 (1%) Strand=Plus/Minus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCT 107789 |||||| |||| | || ||||| | | ||| ||||| ||| ||| |||||||||| Sbjct 31588249 ATGGTGATCCACAACAACATTGAGATGTGTGAGAGGCTGTTGCAGGCCCTGTATGCCCCG 31588190 Query 107790 CAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTC 107849 ||||| | | ||||||||| |||| ||| || | ||||| || | |||| || Sbjct 31588189 CAGAATCTCTGCTGTGTCCATACAGATGCCAAGCTCCTAAGGACTTCCAGA-AGGCAGTA 31588131 Query 107850 AAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTT 107909 | | || | ||||| |||||||||||||| |||||| || || |||||| Sbjct 31588130 CATGGGATCGTATCCTGTTTCCCCAATGTCTTTG-GGCCAGCAATCTGAAGTGGGTGGTC 31588072 Query 107910 TATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC 107969 ||||| |||||||| | | || || || | ||||| ||||||||| |||||||| Sbjct 31588071 TATGCATCCTGGTCAATGCTTCAGGCCAACATCAACTGCATGGAAGACCTGCTCCAGCAT 31588012 Query 107970 TCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 || | || ||| | | ||| ||||||||||| || || ||||| | | |||| |||| Sbjct 31588011 CCAATACCCTGGCAATTCTTCCTGAATACATGTGGCACTGACTTTGCACTCAAGATCAAT 31587952 Query 108030 GCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA 108089 ||| |||| ||| ||||| ||| | |||| | || ||||| || || | || Sbjct 31587951 GCCAAGATCCTCCAAGCCCTGAAGCTTCTGAAAGTAAAAAACAGCCTGAAGCCAGAAAAG 31587892 Query 108090 CCTTCTGAGTCCaaaaa---aaaTCGCTGGAAATACCGCTATGAGGTG 108134 || || ||| |||| || |||||||||| | | ||||| ||| Sbjct 31587891 CCCTCAGAGGCCAAGAAGTTCCATCGCTGGAAGTTCGCTTATGAAGTG 31587844 >seq6231 Length=55547322 Score = 167 bits (184), Expect = 2e-36 Identities = 290/417 (70%), Gaps = 6/417 (1%) Strand=Plus/Minus Query 107722 CCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT 107781 |||||| || ||| |||| | || ||||| | | || ||||| ||| |||| ||| Sbjct 21538179 CCTACTTCATAGTGATCCACAACAAAATTGAGATGTGAGAGAGGCTGTTGCCAGCCCTGT 21538120 Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 || |||| ||||| | | |||| |||| | |||| ||| || | ||||| || | Sbjct 21538119 ATACCCCACAGAAGCTCTGCTGTATCCATATAGATGCCAAGCTCCTAAGGACTTCCAGA- 21538061 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 ||| || | | || | | ||||||||||||||||| ||||||| ||| || Sbjct 21538060 AGGTAGTACATGGGATCACATTGTGCTTCCCCAATGTCTTTCTGGCCAGCAAGCTGAAGT 21538001 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGC 107961 |||||| ||||| || ||||| | | || || || | ||||| ||||||||||||| Sbjct 21538000 GGGTGGTCTATGCATCATGGTCAATGCTTCAGGCCAACATCAACTGCATGGAAGACTTGC 21537941 Query 107962 TCCAG-AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||| | || ||| || ||| | | | ||||||||||| || || ||||| |||| Sbjct 21537940 TCCAGCATCT-AGTTCCCTGGCAAATCCTCCTGAATACATGTGGCACTGACTTTGCCATC 21537882 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 |||| ||||||| |||| ||| ||||| ||| | |||| | | ||||| ||||| Sbjct 21537881 AAGATCAATGCCAAGATCCTCCAAGCCCTGAAGCTTCTGAAAGTGGAAAACAGCCTGGAG 21537822 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaa---aaaTCGCTGGAAATACCGCTATGAGGTG 108134 | || || || ||| |||| || ||| |||||||| || ||||| ||| Sbjct 21537821 CCAGAAAAGCCCTCAGAGGCCAAGAAGTTCCATCACTGGAAATTCCCTTATGAAGTG 21537765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348238689332556