Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3201 118 8e-22 >seq3201 Length=36968188 Score = 118 bits (130), Expect = 8e-22 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 || |||||||| || || || ||| || |||||||| || |||| ||| ||| | Sbjct 931492 TTGATGGCTTTACCCCCCTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGTGAGCTT 931551 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || ||||||| |||| | ||||||||||| || || |||||||| ||||| Sbjct 931552 TCTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAACATTGCC 931611 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 |||||| | ||||| ||||| |||||||| ||||| |||| Sbjct 931612 AGTTATTCACTGCTCACGTACATGATTGCTCATGTGACAG 931651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399149487299830