Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2185 125 6e-24 >seq2185 Length=13751209 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||||||| | | |||| |||||| ||| |||||||||||| ||||||||| Sbjct 8329661 GCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGA 8329602 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| ||||| || || || || | || ||| ||||| || || Sbjct 8329601 CAGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 8329542 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| || |||||| || || ||| || | | | |||| | ||| || Sbjct 8329541 AATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAAC 8329482 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || |||||||| ||||| |||||||| || || |||||| Sbjct 8329481 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 8329433 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||||||||| |||||||||||| | Sbjct 8330344 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 8330285 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 8330284 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8330225 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| || || ||| || | | | | |||| | ||||||| Sbjct 8330224 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 8330165 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||||| |||||||| ||||| |||||||| ||||| |||||| Sbjct 8330164 TCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 8330117 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| ||| ||||||||| ||||||||||| Sbjct 8329205 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 8329146 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 8329145 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGG 8329086 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || |||||| || || ||| || | | | | |||| | |||||| Sbjct 8329085 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 8329026 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | || || |||||||||||||| |||||||| ||||| |||||||| Sbjct 8329025 CTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 8328975 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| ||| ||||||||| |||||||||||| Sbjct 8329889 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 8329830 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || || | || ||| |||||||| || Sbjct 8329829 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGG 8329770 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || |||||| || || ||| || | | | | |||| | |||||| Sbjct 8329769 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 8329710 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||||||||| |||||||| ||||| |||||| Sbjct 8329709 CTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329661 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| ||| ||||||||| |||||||||||| Sbjct 8330117 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 8330058 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || || || ||||| || || || || | || ||| |||||||| || Sbjct 8330057 CAGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGG 8329998 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || |||||| || || ||| || | | | |||| | |||||| Sbjct 8329997 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCCAC 8329938 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||| ||||| |||||||||||||| |||||| Sbjct 8329937 CTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8329889 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| ||| |||||||||||| ||||| || Sbjct 8329433 GCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGA 8329374 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 8329373 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 8329314 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | |||| | ||| || Sbjct 8329313 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCAAC 8329254 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||||||||| |||||||| ||||| |||||| Sbjct 8329253 CTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395041042538974