Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3826 129 5e-25 seq1210 86.0 6e-12 >seq3826 Length=16266510 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||| ||||| ||||||| ||| || Sbjct 9775671 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9775612 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | ||||| || ||||||||||| ||||| ||||| |||||||| ||| Sbjct 9775611 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 9775552 Query 11774 ACTACTCTTTCTCC 11787 ||||| | |||||| Sbjct 9775551 ACTACACGTTCTCC 9775538 >seq1210 Length=32045156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 142882 CAATGGATTTTTGGGAATATACTATGTAAAATA--ATGTCCGTATTATACTACGTAGGAT 142939 |||||||||||||| |||||| | ||||||||| |||| ||| | |||||| | || | Sbjct 26687421 CAATGGATTTTTGGAAATATAATGTGTAAAATAGTATGT-GGTAGT-TACTACATGGGTT 26687478 Query 142940 TCTTTAGTAATATGTTTATAATAACACTTATGAGTATAGATAGATATTTTGCGATCGTTC 142999 ||| ||| | ||| || ||||||| | ||||| ||||| || || || | || |||| Sbjct 26687479 TCTATAGCAGTATATTCTTAATAACCGTGATGAGCATAGACAGGTACTTGGGCATTGTTC 26687538 Query 143000 ATCCTATA 143007 || ||||| Sbjct 26687539 ATACTATA 26687546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 3448 TATAGGATGAACGATCGCAAAATATCTATCTATACTCATAAGTGTTATTATAAACATATT 3507 ||||| |||||| || | || || || ||||| ||||| | ||||||| || ||| | Sbjct 26687546 TATAGTATGAACAATGCCCAAGTACCTGTCTATGCTCATCACGGTTATTAAGAATATACT 26687487 Query 3508 ACTAAAGAATCCTACGTAGTATAATACGGACAT--TATTTTACATAGTATATTCCCAAAA 3565 ||| |||| || | |||||| | ||| |||| ||||||||| | |||||| |||||| Sbjct 26687486 GCTATAGAAACCCATGTAGTA-ACTACC-ACATACTATTTTACACATTATATTTCCAAAA 26687429 Query 3566 ATCCATTG 3573 |||||||| Sbjct 26687428 ATCCATTG 26687421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468483253563360