Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4704 129 8e-25 seq3826 116 5e-21 seq6834 96.9 5e-15 >seq4704 Length=24298902 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| || || ||||| || || ||||| ||||| | ||| | ||| | Sbjct 16882145 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCCTCTCTTCT 16882086 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||||| ||||| || || || |||||||||||||| ||||| ||||||| Sbjct 16882085 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 16882026 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 16882025 CAACCACTCTCTCCCC 16882010 >seq3826 Length=16266510 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 50102 CAAC 50105 | || Sbjct 9775553 CTAC 9775550 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| ||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 9772547 ATCTTTTATGTAAGTGTCGATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 9772488 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || || || ||||| | ||| || || |||||||||||| Sbjct 9772487 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 9772442 >seq6834 Length=1011959 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||||||| ||||||||||||||||| || || | || || || || | || ||| Sbjct 383476 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 383417 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 383416 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 383357 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | ||||||| Sbjct 383356 TCCAGGTAAATGGCAAAGGCCCCCGGTC 383329 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 391042 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 390983 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 ||||||||||| |||||||| ||||| || || || |||||||| || Sbjct 390982 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 390936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718205107514160