Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3826 120 3e-22 seq4704 105 6e-18 >seq3826 Length=16266510 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || || || || ||||| || | ||| ||||| ||||||| ||| | Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | |||||||| || | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||||| Sbjct 9775553 CTACTACACGTTCTCC 9775538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | |||||||| | ||||| |||||||||||||| || || Sbjct 9777045 TTCGACATGACTCCCATCCTCTGATATTCTCCTACTCTCTTTTCAAAGAAGTTTGTCTTG 9776986 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||| ||||| || || |||||||| ||||||||||| Sbjct 9776985 CCTTCAAGTGAAATGTTCTCCATAAAGTCAAATGGATT 9776948 >seq4704 Length=24298902 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||| || || || || || || | ||| |||||||| |||| || | Sbjct 16882145 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCCTCTCTTCT 16882086 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || || ||||| ||||| || ||||||||||| | Sbjct 16882085 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 16882026 Query 14014 C 14014 | Sbjct 16882025 C 16882025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479685460119600