Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2185 86.0 6e-12 >seq2185 Length=13751209 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||| ||| || |||| ||||| || || || ||| Sbjct 8330314 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 8330255 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| ||||| || |||||||||||||| || || || Sbjct 8330254 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 8330195 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| || || || | || | ||||||||||||| || Sbjct 8330194 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 8330135 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 8330134 TTCACGAAGATCTGCAT 8330118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || || || || |||||||| || || |||| || | ||||| || || ||||| Sbjct 8329174 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTACC 8329116 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| || | ||||| ||||| || |||||||||||||| || || || Sbjct 8329115 AGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 8329056 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| |||| || || || | ||| | |||||||| |||| || Sbjct 8329055 CACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGT 8328996 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 8328995 CTTCACGAAGATCTGCAT 8328978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || || || || |||||||| ||| || |||| || | ||||| || || || || Sbjct 8329858 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 8329800 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| || | ||||| ||||| || |||||||||||||| || || || Sbjct 8329799 AGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 8329740 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| |||| || || || | ||| | |||||||| |||| || Sbjct 8329739 CACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGT 8329680 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 8329679 CTTCACGAAGATCTGCAT 8329662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506969440498080