Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2185 96.9 2e-15 >seq2185 Length=13751209 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||| || ||||| || || || ||||| ||||||| || || Sbjct 8329192 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 8329133 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| ||| || | | |||||||| | ||| ||||||||||| Sbjct 8329132 TCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTG 8329073 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| |||| | || || ||||| Sbjct 8329072 TCCTGGATCTTGGCC---TTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTG 8329016 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || || || ||||| || || || ||||| || |||||||||| Sbjct 8329015 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTTA 8328973 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/241 (68%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || || || | |||| ||||| |||| || ||||| || || ||||| Sbjct 8329442 AATCTGCATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATT 8329383 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||||||||| || | || |||| ||||| ||| ||| || | | ||||| Sbjct 8329382 GTAATCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTG 8329323 Query 33253 GTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 ||| | ||| ||||| || || || | | | ||| || || | | || ||||| Sbjct 8329322 GTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCC---TTCACGTTCTCGATAGTGTC 8329266 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| | ||| || ||||| || || || ||||| || || || ||||| || ||||| Sbjct 8329265 ACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329206 Query 33370 G 33370 | Sbjct 8329205 G 8329205 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||| || ||||| || || || ||||| || |||| || || Sbjct 8329876 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 8329817 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| ||| || | | |||||||| | ||| ||||||||||| Sbjct 8329816 TCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTG 8329757 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| |||| | || || ||||| Sbjct 8329756 TCCTGGATCTTGGCC---TTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTG 8329700 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || || ||||| || |||||| Sbjct 8329699 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318750039086412