Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2185 87.8 2e-12 >seq2185 Length=13751209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||| || || ||||| || || || |||||||| ||| || || ||| Sbjct 8330330 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 8330271 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || ||||| ||| | || |||||||| || ||| ||| | |||||||||||| Sbjct 8330270 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8330211 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || ||||| | ||| | || | || ||| |||| ||||||||| Sbjct 8330210 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGT 8330151 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||||| || || || || || ||||| Sbjct 8330150 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419550923277414