Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5050 149 1e-30 seq2185 149 1e-30 seq3826 107 4e-18 seq4164 87.8 4e-12 >seq5050 Length=13523281 Score = 149 bits (164), Expect = 1e-30 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| ||| |||| |||||||| |||||| | || || | || |||||| Sbjct 8525083 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 8525142 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || ||||||||||| ||||| ||||| || ||||| |||||||||| || ||||| Sbjct 8525143 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGCACCATGTTC 8525202 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 || ||| | ||||| || || || ||| | |||||||||||| Sbjct 8525203 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACAA 8525244 >seq2185 Length=13751209 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | || || || ||||||||||| ||||| Sbjct 8329663 ATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCG 8329604 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| || |||||||| || ||||| Sbjct 8329603 GACAGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGG 8329544 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || || ||||| | ||| || || || || Sbjct 8329543 GGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCA 8329484 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| ||||| || || || || || |||||||| Sbjct 8329483 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 8329434 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||||||||| || ||| Sbjct 8329435 ATGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCA 8329376 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 8329375 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGG 8329316 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || || || | || || || || || Sbjct 8329315 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCA 8329256 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 8329255 ACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329206 >seq3826 Length=16266510 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 9775538 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 9775597 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||||||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 9775598 TCCATTTTTTGGTTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 9775657 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 9775658 ATCAGTAGAGATGA 9775671 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| | ||||| | |||||||| || |||||||| || || ||||| Sbjct 9772440 CAAGAAGTGCAGATCACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 9772499 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 ||||||||||| ||||||||||| | || || ||||| ||| | ||| Sbjct 9772500 ATTCATTCAGAAATGTACAGTCTGCTTATCGACACTTACATAAAAGAT 9772547 >seq4164 Length=2313408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 78491 TTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTA 78550 || |||||||||||| | ||||||| ||| |||| | | || ||||| ||||| | ||| Sbjct 259370 TTGTGGTGGTATTATTTTTCTAAAGTAATTGAATTCATGGACACTATTTTCTTTGTACTA 259311 Query 78551 CGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608 || ||||| | |||||| | || || ||||||||||||||| || ||||||| Sbjct 259310 CGGAAGAAGAACAGTCAAATCACCTTCCTTCATGTATATCATCATGCCACCATGTTTA 259253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151293747240552