Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3682 87.8 2e-12 >seq3682 Length=31185698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || || ||| | ||||| || | ||| ||||||| || || || ||||||||| Sbjct 316099 TTAGGTTGCAAGCATGTGAAAGGTATCCTGTTATATGGACCGCCAGGCTGTGGTAAAACA 316158 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAAT 164616 | ||||| || |||| |||| | | ||| | || || ||| | |||||| Sbjct 316159 CTTATGGCAAGACAGATTGG-CAAGATGCTGAATGCCAGAGAACCA--AAAGTGGTTAAT 316215 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 ||||| ||| | | |||||||||||||| |||||||| || || | | ||| | || Sbjct 316216 GGTCCAGAAATCCTTAACAAATATGTAGGCGAGTCAGAGGCCAACATCCGCAAGCTCTTC 316275 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || || ||||| ||||||| || Sbjct 316276 GCTGATGCAGAAGAGGAACAAAGGA 316300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595819161050400