Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq6099 143 4e-29 seq6215 141 1e-28 >seq6099 Length=15850405 Score = 143 bits (158), Expect = 4e-29 Identities = 211/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || |||||| | |||| || || | | ||| | ||||| || Sbjct 5122142 AAGGGACAACCCTTTACGTTGTTGCAGATGAGTTTTTGCAGGGAGGCAGTGTTGACTATT 5122083 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| || || ||| || || ||||| || |||||||| | || |||||||| | Sbjct 5122082 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 5122023 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| |||||||| | || || || || || ||||| | || ||||||| ||| Sbjct 5122022 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATAGTCTCACCAAAG 5121963 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||| |||||||||||||| || || | || | |||| ||||| ||| || ||| Sbjct 5121962 ATGGCTCCTGGACGGGGCTTTTCTACTAACAGACCAGGATACAGCTCCATAGCATCAATG 5121903 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTATTAATAAA 8988 ||||| ||||| | ||||| || || ||||| ||||||||| |||||| ||| Sbjct 5121902 TCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTAAAATATTAACAAA 5121844 Score = 114 bits (126), Expect = 2e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || | |||| ||| ||||||||||||||| | || || Sbjct 5119727 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGTTCCTGCTTAAGG 5119668 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||| ||||||||||| || ||||| |||||||| | ||| || Sbjct 5119667 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 5119608 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| |||| || || |||| | | | || || || || | |||||| Sbjct 5119607 ACCAGACCAAACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGA 5119548 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || ||||| | | || ||| || || | || || |||||||| || |||| ||| Sbjct 5119547 TACATCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 5119488 Query 9862 T 9862 | Sbjct 5119487 T 5119487 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || || ||||| |||||||| || ||| ||||||| |||| Sbjct 5118613 CTTACCCCATGCCCAAGGCCTTTTGTGAAGGCTGGTCCTTTGTGGTGATCAGTCTTAAAG 5118554 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| ||||| |||| || | ||||| | || |||| ||| ||||| Sbjct 5118553 AACTGGTGGGTGAAGTGTTGAGCAAAGAATGTGAACATAATATTTGTGCTCTGTGGATCT 5118494 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| | || | ||| || ||| || |||||||| Sbjct 5118493 GGAATAAATTTTTTCCTCAGCAGAAACTTCTCCACAAC 5118456 >seq6215 Length=22149898 Score = 141 bits (156), Expect = 1e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 ||||||||||||||||| |||||||| | |||||||||||| |||| ||| || || Sbjct 21085328 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 21085269 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || || ||||| | ||| | |||||||| || ||||||||||||| | Sbjct 21085268 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 21085209 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||| |||| || | || | ||| ||||||| || |||||||| ||||| || Sbjct 21085208 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAG 21085153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || | ||||| || || || ||||| | ||| || || Sbjct 21083711 TCACCGATGAGGATGAGCCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 21083652 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| | || || || | |||||| || | |||||||| || ||||||||| Sbjct 21083651 TCCTGCTTCAGCATGTCACAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTTGCGTACATC 21083592 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAG 9773 || || || |||| || ||||| |||| || || || ||||| Sbjct 21083591 ATCAGCCCGGGCAGGAGCCCAAACACCTCCTGGCCCACGGCCAG 21083548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708461971563360