Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7000 138 2e-28 seq2184 132 8e-27 seq487 80.6 4e-11 >seq7000 Length=13710731 Score = 138 bits (152), Expect = 2e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 9484660 CTGCGGGACAACATCCAGGGTATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 9484601 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | ||| | ||| ||||| Sbjct 9484600 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTTAAGGTCTTC 9484541 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || || ||| || |||||||| || || ||||| ||| Sbjct 9484540 CTAGAGAACGTGATCCGTGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 9484481 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 9484480 ACCGCCATGGACGTAGTCTACGCGCTCAAGCGCCAGGGCCG 9484440 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 9487040 CTGCGGGACAATATCCAGGGTATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 9486981 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| || | || | ||| ||||| Sbjct 9486980 GGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGACCCGCGGGGTGCTTAAGGTCTTC 9486921 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || ||| || ||||||||||| || ||||| ||| Sbjct 9486920 TTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCTAAGCGCAAGACCGTC 9486861 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || |||||||| Sbjct 9486860 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGGCAAGGCCG 9486820 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 9514424 CTGCGAGACAACATCCAGGGTATCACCAAGCCGGCCATCCGACGCCTGGCTCGGCGCGGC 9514365 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||| ||||| Sbjct 9514364 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTC 9514305 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 9514304 TTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 9514245 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || ||||| | || || || ||||| | | || ||||| || Sbjct 9514244 ACCGCCATGGACGTGGTTTATGCGCTCAAGCGCCAGGGCCGCACTCTCTACGGTTTCGG 9514186 >seq2184 Length=4884573 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 4762454 CGCCAAGCGGCACCGTAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCAT 4762395 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 4762394 CCGCCGCCTGGCCCGCCGCGGGGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 4762335 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| || | ||| ||| | ||| || || Sbjct 4762334 CCGCGGGGTGTTGAAGGTTTTCCTGGAGAACGTCATTCGTGACGCTGTTACCTACACGGA 4762275 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | ||||| || |||| || || || Sbjct 4762274 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTCTACGCCCTGAAGCGCCAGGG 4762215 Query 16672 CCG 16674 ||| Sbjct 4762214 CCG 4762212 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 4787214 CGCCAAGCGGCACCGTAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCAT 4787273 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 4787274 CCGCCGCCTGGCCCGCCGCGGGGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 4787333 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| || | || ||| | ||| || || Sbjct 4787334 CCGCGGGGTGTTGAAGGTTTTCCTGGAGAACGTCATTCGCGACGCTGTTACCTACACGGA 4787393 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | ||||| || |||| || || || Sbjct 4787394 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTCTACGCCCTGAAGCGCCAGGG 4787453 Query 16672 CCG 16674 ||| Sbjct 4787454 CCG 4787456 >seq487 Length=30449787 Score = 80.6 bits (88), Expect = 4e-11 Identities = 152/222 (68%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGAT--CTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCC 16493 ||||| || |||| | |||| | | || ||||| || |||||||| | || |||| Sbjct 15414029 AAGCGCCACCGCAAAGTGCTCTACAACAT--CATCCGGGGCATCACCAAACTGGCCATCC 15414086 Query 16494 GTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTC 16553 | | ||||||| |||||| | |||||| |||| | | | ||||| |||| Sbjct 15414087 GCTGCCTGGCTCAGTATGGTGGCATGAAGCGTATCTCCAGCCTCATTTATGAGGAGACCT 15414146 Query 16554 GTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGC 16613 ||| | ||||| |||| || ||| || ||||||||||| || ||| | ||| Sbjct 15414147 GTGGGGCACTGAAGGTCTTACTGGAGAATGTGATCCATGATGCCATCACCTACATGAAGC 15414206 Query 16614 ACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || | |||| || || ||||| ||||||| || ||||||| Sbjct 15414207 ACACCAAACAGAAAACCATCACCACCATGGACATGGTCTATG 15414248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068713906142