Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3826 102 9e-17 >seq3826 Length=16266510 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| ||||| || | ||||||||||| || | || |||||||||||||| || || Sbjct 9775671 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9775612 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 |||||||| || || ||||| | || |||||||| || || || || || ||||| || Sbjct 9775611 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 9775552 Query 21620 ACTAATCGTTCACC 21633 |||| ||||| || Sbjct 9775551 ACTACACGTTCTCC 9775538 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||| |||| || ||||| | | |||| |||||| ||| ||||| | |||| Sbjct 9777090 TTCATTCAAAATTCTGCATCCAGAGTGAAAGAGTTATCTGTAGGTTTCGACATGACTCCC 9777031 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| ||||| || || |||||||| ||||| | ||| || Sbjct 9777030 ATCCTCTGATATTCTCCTACTCTCTTTTCAAAGAAGTTTGTCTTGCCTTCAAGTGAAATG 9776971 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| ||||||||||| || Sbjct 9776970 TTCTCCATAAAGTCAAATGGATTCTC 9776945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531853633696560