Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2185 114 1e-20 >seq2185 Length=13751209 Score = 114 bits (126), Expect = 1e-20 Identities = 170/237 (72%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| |||| ||||| || |||||||| || ||||||| Sbjct 8330350 CAGTTACCACCCCTC--AGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGT 8330293 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| || ||| | | || |||| || ||||| ||| | || |||| ||| |||| Sbjct 8330292 AGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGT 8330233 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| |||||||| || || || |||||| | | | ||||| | Sbjct 8330232 CGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACT 8330175 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| ||| ||||| || |||||||| || || || || |||||||| Sbjct 8330174 GGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || || |||||||||| || ||| | | || Sbjct 8329646 CAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 8329587 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||||| || ||| | || |||| ||| ||||| || | || |||||||| Sbjct 8329586 TTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTTGTC 8329527 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| |||| ||||||| Sbjct 8329526 CTGGATCTTGGC--CTTCACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGTGATG 8329469 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || || ||||||||||| Sbjct 8329468 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 8329434 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || || | | || Sbjct 8330102 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 8330043 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | ||||| || ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 8330042 TTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTC 8329983 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | |||||| | ||||||| || | |||||| Sbjct 8329982 CTGGATCTTGGC--CTTCACGTTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGTGATG 8329925 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || ||||| |||||||| Sbjct 8329924 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8329890 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| ||||| Sbjct 8329874 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTC 8329819 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || ||||| ||| | || |||| ||| ||||| || | ||| |||| Sbjct 8329818 CATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTT 8329759 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | ||||||| || | || Sbjct 8329758 TGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGT 8329701 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || || || |||||||| Sbjct 8329700 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| ||||| Sbjct 8329190 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 8329135 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || || || ||| | || |||| ||| ||||| || | ||| |||| Sbjct 8329134 CATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTT 8329075 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | ||||||| || | || Sbjct 8329074 TGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGT 8329017 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||||| || || ||||| || || || || |||||||| || Sbjct 8329016 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 8328975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || || ||||| || | || ||| | | || Sbjct 8329418 CAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATC 8329359 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 8329358 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 8329299 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | |||||| | |||||| || | |||||| Sbjct 8329298 CTGGATCTTGGC--CTTCACGTTCTCGATAGTGTCACTGGGCTCAACCTCGAGAGTGATG 8329241 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || || || |||||||| Sbjct 8329240 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405052976851060