Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5657 122 6e-23 seq2055 122 6e-23 seq2185 111 1e-19 seq1467 109 4e-19 seq2827 98.7 7e-16 seq2195 98.7 7e-16 seq563 98.7 7e-16 seq6780 95.1 8e-15 seq3682 95.1 8e-15 seq2722 95.1 8e-15 seq4053 91.5 1e-13 seq640 91.5 1e-13 seq4488 89.7 3e-13 seq4084 86.0 4e-12 >seq5657 Length=28110136 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 7093281 AAGCCCGTTCCCTTGGCTGTGGTTTCACTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 7093340 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 7093341 TCATCCATTCATGCACGTCACTAATTAGATGACGA 7093375 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||| |||| ||||||||||| ||||| || |||||| | Sbjct 16868035 AAGCCCATTCCCTTGGCTGTCCTTTCACTAGATAGTAGGTAGGGACAATGGGAATCTCAT 16868094 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| ||||||| ||||||||||||||||| || Sbjct 16868095 TCTTCCATTCATGCACGTCACTAATTAGATGATGA 16868129 >seq2055 Length=9350 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 2719 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 2778 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| ||||||||||||||||||||||| |||| Sbjct 2779 TCCTCCATTCATGCGCGTCACTAATTAGATAACGA 2813 >seq2185 Length=13751209 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||||| || || ||| |||||| || || ||||| |||||| Sbjct 8329204 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 8329145 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || || |||| ||| Sbjct 8329144 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8329085 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||||||||||| | || || | || || Sbjct 8329084 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 8329025 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || || ||||||| ||| |||||||| |||||||||||| Sbjct 8329024 TCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTT 8328974 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||||| || || ||| |||||| |||||||||||||||||| Sbjct 8329432 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAATCAGAC 8329373 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || || | ||| Sbjct 8329372 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 8329313 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || |||||| |||| || ||| || | ||||| Sbjct 8329312 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCAACC 8329253 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||||| ||| |||||||| ||||||||| Sbjct 8329252 TCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329205 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| |||| ||||| || || ||| |||||| ||||||||||| || ||| Sbjct 8329660 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGAC 8329601 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| || || | || || || | ||| Sbjct 8329600 AGGGTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 8329541 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| || || |||||| || | || || || | ||||| Sbjct 8329540 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAACC 8329481 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||| ||| |||||||| ||||||||| Sbjct 8329480 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 8329433 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||||| || || ||| |||||| || || ||||| || ||| Sbjct 8330116 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8330057 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || |||| ||||| || ||||| || || | || || |||| ||| Sbjct 8330056 AGAGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8329997 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || |||||| |||| || ||| || | || || Sbjct 8329996 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCCACC 8329937 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| ||||| || ||||||||| Sbjct 8329936 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8329889 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||||| || || ||| |||||| || || ||||| || ||| Sbjct 8329888 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8329829 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || || |||| ||| Sbjct 8329828 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 8329769 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || |||||| |||| | || || | || || Sbjct 8329768 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 8329709 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||||| ||| |||||||| ||||||||| Sbjct 8329708 TCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 8329661 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| |||| |||| ||||| || || || |||||| || || ||||| || Sbjct 8330347 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCG 8330288 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| || | || || | || || || ||||| || || | || || |||| | Sbjct 8330287 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGG 8330228 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||||||||||| || || |||||| |||| | || || | || Sbjct 8330227 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCC 8330168 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||||| || || || |||| ||| |||||||| ||||||||| Sbjct 8330167 ACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 8330117 >seq1467 Length=19222777 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 5725778 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGACAGTAGGTAGGGACAGTGGGAATCTCGT 5725719 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| || ||||||||||||||| Sbjct 5725718 TCATCCATTCATGCGTATCGCTAATTAGATGACGA 5725684 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 5724241 CTCTATCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 5724182 Query 20007 GGTAATATTTAGCCTTA 20023 | | | |||||||||| Sbjct 5724181 GCCAGTTTTTAGCCTTA 5724165 >seq2827 Length=1139 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 461 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCGT 520 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 521 GCCGGTATTTAGCCTTA 537 >seq2195 Length=14595547 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 10971653 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 10971712 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 10971713 GCCGGTATTTAGCCTTA 10971729 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||| | | |||||||||| |||||||||||| Sbjct 1277728 CTCTGTCTTCAAAGTTCTTTTCAACTTTCCTTTATGGTACTTGTTGACTATCGGTCTCGT 1277669 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1277668 GCCGGTATTTAGCCTTA 1277652 >seq563 Length=18600682 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 145055 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATCGGTCTCGT 144996 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 144995 GCCGGTATTTAGCCTTA 144979 >seq6780 Length=22457707 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| || ||| Sbjct 10219256 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTGTCGT 10219197 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 10219196 GCCGGTATTTAGCCTTA 10219180 >seq3682 Length=31185698 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| Sbjct 5643208 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCCT 5643267 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 5643268 GCCGGTATTTAGCCTTA 5643284 >seq2722 Length=16752973 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||| ||||||||| |||||||||||| ||||| || ||||| || Sbjct 398103 AAGCCCCTTCCCTTGACTGTGGTTTTGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGT 398044 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||||| ||| || Sbjct 398043 TCATCCATTCATGTGCATCACTAATTAGTTGATGA 398009 >seq4053 Length=10433505 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||||||| ||||||||||||| ||| |||||||||||| |||| ||||| | Sbjct 3025974 TCTCTCTCTTCAAAGATCTTTTCAACTTTTCCTTACGGTACTTGTTGACTATTGGTCTTG 3025915 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 3025914 CGCCGGTATTTAGCCTTA 3025897 >seq640 Length=13835840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||| |||||||||||| |||||||||||| ||||| || ||||| || Sbjct 11207597 AAGCCCAATCCATTGGCTGTGGTTATGCTAGATAGTAGGTAGGGACAGTGGGAATCTTGT 11207538 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||| || Sbjct 11207537 TCATCCATTCATGCATGTCACTAATTAGATGATGA 11207503 >seq4488 Length=10099443 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| |||||||||||||||||||||||| |||||||||||| || ||||||| | Sbjct 4893117 CTCTCTCGTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTTTCGGTCTTGT 4893058 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4893057 GCCGGTATTTAGCCTTA 4893041 >seq4084 Length=1028223 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| | | ||||||| || |||||||||||| Sbjct 988280 CTCTCTCTTCAAAGTTCTTT-CAACTTTCCTTTATGGTACTTCTTTACTATCGGTCTCGT 988338 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 988339 GCCAGTATTTAGCCTTA 988355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334918241093114