Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4704 120 4e-22 seq3826 105 8e-18 seq6834 89.7 7e-13 >seq4704 Length=24298902 Score = 120 bits (132), Expect = 4e-22 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 32659 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 16882170 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 16882111 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 ||||| ||||| | ||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 16882110 AGTCCAGGCATCAAGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 16882051 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 || |||||||| ||||| |||||||||| | |||||| || Sbjct 16882050 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 16882010 >seq3826 Length=16266510 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 9775673 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9775614 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 9775613 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9775554 Query 32803 C 32803 | Sbjct 9775553 C 9775553 >seq6834 Length=1011959 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 383476 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 383417 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 383416 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 383357 Query 63191 TCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 383356 TCCAGGTAAATGGC 383343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| | ||| || ||||||||||| | || || || || || || || || || | Sbjct 374945 CACTAAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCCAGGA 374886 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || |||| ||||| || || || | || || ||||| || |||| Sbjct 374885 TGGCATAGTCGGGGTGTTTGGTAGTCAGGGTCGCAGCCGTCTCCGCAGCCAGTGTATCCA 374826 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||| || || ||||| | || | |||||||| || ||||| Sbjct 374825 GCTCTACTGTGGTAACACCGCTGTAAAGACCTTGGATCACTTTCAT 374780 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 391042 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 390983 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62298 || |||||||| |||||||| ||||| || || ||||| ||||| || Sbjct 390982 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 390936 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 ||| || ||||| || || || ||||||||||| || | ||||| || || ||||| Sbjct 384675 TATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTGGTTGCTCTTCCG 384616 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 |||||| | |||||||| || ||| | || ||||| || ||| |||| || || || || Sbjct 384615 GTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGGGACTCAATGAT 384556 Query 62920 CGCTTTCCAGA 62930 || | ||||| Sbjct 384555 GGCGTACCAGA 384545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633575812682400