Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2185 134 1e-26 >seq2185 Length=13751209 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| |||| |||||| | | Sbjct 8329890 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329949 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||| || ||| ||||||||||| ||||| || ||||| Sbjct 8329950 GACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 8330009 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| ||||||||| |||||| || ||| ||||| Sbjct 8330010 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACTCTGTCCGACTACAAC 8330069 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 8330070 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 8330101 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| | | Sbjct 8329206 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 8329265 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| ||||| || ||| ||||| || || ||||| |||||||| Sbjct 8329266 GACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 8329325 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| ||||| || ||||||||| Sbjct 8329326 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGATTACAAT 8329385 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || | ||||| Sbjct 8329386 ATTCAGAAGGAGTCCACCCTGCACCTGGTGCT 8329417 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | | Sbjct 8329434 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 8329493 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||||||||| ||||| |||||||| Sbjct 8329494 GACACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCCCCTGACCAG 8329553 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| | ||||||| ||||| || ||| |||||| Sbjct 8329554 CAGAGGCTCATCTTTGCTGGGAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 8329613 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || | ||||| Sbjct 8329614 ATTCAGAAGGAGTCCACCCTGCACCTGGTGCT 8329645 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| |||||| | | Sbjct 8329662 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329721 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| || ||||| Sbjct 8329722 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 8329781 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| ||||| || ||| ||||| Sbjct 8329782 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8329841 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 8329842 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 8329873 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| |||||| | | Sbjct 8328978 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCCAGT 8329037 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| || ||||| Sbjct 8329038 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 8329097 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | ||||||| ||||| || || ||||| Sbjct 8329098 CAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 8329157 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 8329158 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 8329189 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || |||| || | || |||||| | | Sbjct 8330118 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 8330177 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| || ||||| Sbjct 8330178 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 8330237 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| ||||| || ||| ||||| Sbjct 8330238 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 8330297 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || || || || || || | ||||| | || || || || || Sbjct 8330298 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGTAA 8330347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433290535273610