Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2185 178 2e-39 seq1956 93.3 8e-14 >seq2185 Length=13751209 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 8329879 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8329820 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || |||||||| ||||||||||| Sbjct 8329819 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCT 8329760 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | || || || | ||| Sbjct 8329759 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTG 8329700 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| |||||||| ||||| |||||||| Sbjct 8329699 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8329662 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 8330107 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 8330048 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||||| ||| ||||| || || ||||| || || |||||||| ||||||||||| Sbjct 8330047 CCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCT 8329988 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| |||||| ||||| | || || || | ||| Sbjct 8329987 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGTG 8329928 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 8329927 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8329890 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || || ||||| || |||||||| || ||||| || || | Sbjct 8330335 AGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 8330276 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || |||||||| ||||||||||| Sbjct 8330275 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCT 8330216 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | || || |||| ||| Sbjct 8330215 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTA 8330156 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 8330155 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8330118 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || || || || || | Sbjct 8329195 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 8329136 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || |||||||| ||||||||||| Sbjct 8329135 CCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCT 8329076 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || || | ||| Sbjct 8329075 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTG 8329016 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| |||||||| ||||| |||||||| Sbjct 8329015 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 8328978 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| |||| ||| || |||||||| || || || || || ||||| || || | || Sbjct 8329649 GCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCC 8329590 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | ||| ||||| || || ||||| || || ||||| || ||||| ||||| || Sbjct 8329589 ATCTTCCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTT 8329530 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||| || ||||| ||||| ||| ||||||||||| | || || ||||||||||| Sbjct 8329529 GTCCTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGTGAT 8329470 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || |||||||| ||||| |||||||| Sbjct 8329469 GGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 8329434 >seq1956 Length=91387 Score = 93.3 bits (102), Expect = 8e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 || |||||||| || ||||| ||||||||| |||||||||||| ||| | || || || Sbjct 2357 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTC 2415 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 2416 CAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921540675133680