Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2185 114 1e-20 >seq2185 Length=13751209 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 8330314 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 8330255 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 8330254 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 8330195 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 8330194 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 8330135 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 8330134 TTCACGAAGATCTGCATG 8330117 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||| ||||| ||| || || || |||||| || ||||| ||| Sbjct 8329630 GTGGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTCCCA 8329571 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||| ||||||||||| ||||| || Sbjct 8329570 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCCTGGATCTTGGCCTTC 8329511 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 8329510 ACGTTTTCGATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 8329451 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 8329450 TTCACGAAAATCTGCATG 8329433 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||| || |||||| || ||||| ||| Sbjct 8330086 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCTAGCTGTTTCCCA 8330027 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 8330026 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 8329967 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| ||| || || || | || | || ||||| ||||| || Sbjct 8329966 ACGTTCTCGATAGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTC 8329907 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 8329906 TTCACAAAGATCTGCATG 8329889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || |||||| Sbjct 8329174 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTACCA 8329115 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 8329114 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 8329055 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||| ||||| || Sbjct 8329054 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTC 8328995 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 8328994 TTCACGAAGATCTGCATG 8328977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 8329858 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCA 8329799 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 8329798 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 8329739 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||| ||||| || Sbjct 8329738 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTC 8329679 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 8329678 TTCACGAAGATCTGCATG 8329661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420098075967528