Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6834 114 2e-20 seq4704 87.8 3e-12 >seq6834 Length=1011959 Score = 114 bits (126), Expect = 2e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTT 244380 || ||||||||||| | ||||||||| ||| || || || | || || ||| |||| Sbjct 387187 CCTTTGCTGACGGGACAGCCCTCGTACGTCTCATATGGCCCTT-GCTCTTTGGCGAGCTC 387129 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| | || | ||| ||||||| |||||||| |||||| || ||||| | | Sbjct 387128 ACAGCTGGCCTCCAAAGCGCCGTAGTAAATGGTCTCAAAGATCTGCTGGTTCAGGAGCTG 387069 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | |||||| | ||||| |||||| |||| ||||| || ||||| Sbjct 387068 GGCCTCAGGACTCTCAAAGGGGTATCTCATCAGGATGAAGGCGTCTGCCAGGCCTTGCAC 387009 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||||| | ||| || | ||||||||| Sbjct 387008 ACCGATGCCGATGGGGCGGTGGTGCATATTGGAGCGC 386972 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 || ||||| | ||||||||| || || ||||||||||| |||||||||||| | | Sbjct 383480 CTCGACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCG 383421 Query 245059 CTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCA 245118 |||||| ||| || ||||||||| ||| || | ||| ||||||| ||| | |||||| Sbjct 383420 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCA 383361 Query 245119 GGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 ||||||| ||| | || | ||| || || Sbjct 383360 CGGCTCCAGGTAAATGGCAAAGGCCCCCGG 383331 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 384703 CCACCTCATCTTTGCTGGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGG 384644 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| || || ||| ||| ||| || | |||||| || |||||| | || Sbjct 384643 TGCCCAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGG 384584 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 |||||||| ||||| | | || | || |||||| | | || || ||| || Sbjct 384583 TACCGGTCTCAGTCTGGGACTCAATGATGGCGTACCAGAGCTGCTGGGCTTTCACCACCC 384524 Query 244884 TGCG 244887 |||| Sbjct 384523 TGCG 384520 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || || || ||||| ||||| ||| ||| | |||||||| Sbjct 391043 CACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 390984 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || | ||||||| ||||| |||||| ||||| ||||| || || | || || Sbjct 390983 GGATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGGAG 390924 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||||| || || | ||| Sbjct 390923 GCTGTTCCTAACACCATACCT 390903 >seq4704 Length=24298902 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || || ||||||||||| || | || || Sbjct 16882010 GGGGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCT 16882069 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 |||| || ||||| ||| ||| | | |||||| ||||| || ||||| || || ||| Sbjct 16882070 GCCATATTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTC 16882129 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 16882130 ATTAGCAGAGATGAGG 16882145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944255460721440