Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3201 122 8e-23 >seq3201 Length=36968188 Score = 122 bits (134), Expect = 8e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || |||||||||| ||| || || | || ||||| ||||||||||| ||||| Sbjct 931655 AGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGC 931596 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 ||||| | ||||| ||||| || |||||||||||||| || ||||||||||| | | Sbjct 931595 ACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACA 931536 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGA 20403 ||||| ||||| || | || ||||| || | |||||||| || Sbjct 931535 ACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCATCAAGGA 931489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 20532 CCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 |||| ||||| || ||||| |||||||| ||||||||||| |||||||| ||| |||||| Sbjct 929004 CCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAATCCCCTTCCATTCTGT 928945 Query 20592 GCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTC 20651 | | | || | ||| |||||| | || ||||| ||||| |||||||||| Sbjct 928944 GGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCATCCCAAATCTTGACTC 928885 Query 20652 C 20652 | Sbjct 928884 C 928884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441333661266960